Strain Fitness in Shewanella loihica PV-4 around Shew_2120

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2119 and Shew_2120 are separated by 225 nucleotidesShew_2120 and Shew_2121 are separated by 14 nucleotides Shew_2119: Shew_2119 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,454,694 to 2,456,340 _2119 Shew_2120: Shew_2120 - hypothetical protein (RefSeq), at 2,456,566 to 2,457,546 _2120 Shew_2121: Shew_2121 - diguanylate cyclase (RefSeq), at 2,457,561 to 2,458,919 _2121 Position (kb) 2456 2457 2458Strain fitness (log2 ratio) -1 0 1at 2455.796 kb on - strand, within Shew_2119at 2456.209 kb on + strandat 2456.749 kb on - strand, within Shew_2120at 2457.143 kb on + strand, within Shew_2120at 2457.151 kb on - strand, within Shew_2120at 2457.274 kb on - strand, within Shew_2120at 2457.703 kb on + strand, within Shew_2121at 2457.973 kb on + strand, within Shew_2121at 2458.496 kb on + strand, within Shew_2121

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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2,455,796 - Shew_2119 0.67 -0.4
2,456,209 + -0.8
2,456,749 - Shew_2120 0.19 -0.4
2,457,143 + Shew_2120 0.59 -0.3
2,457,151 - Shew_2120 0.60 -0.8
2,457,274 - Shew_2120 0.72 +0.2
2,457,703 + Shew_2121 0.10 -0.6
2,457,973 + Shew_2121 0.30 +0.9
2,458,496 + Shew_2121 0.69 -0.6

Or see this region's nucleotide sequence