Strain Fitness in Shewanella loihica PV-4 around Shew_1834

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1833 and Shew_1834 are separated by 455 nucleotidesShew_1834 and Shew_1835 are separated by 231 nucleotidesShew_1835 and Shew_1836 are separated by 119 nucleotides Shew_1833: Shew_1833 - putative serine protein kinase, PrkA (RefSeq), at 2,109,122 to 2,111,056 _1833 Shew_1834: Shew_1834 - superoxide dismutase (RefSeq), at 2,111,512 to 2,112,096 _1834 Shew_1835: Shew_1835 - glutaredoxin-like protein (RefSeq), at 2,112,328 to 2,112,678 _1835 Shew_1836: Shew_1836 - uracil-xanthine permease (RefSeq), at 2,112,798 to 2,114,033 _1836 Position (kb) 2111 2112 2113Strain fitness (log2 ratio) -1 0 1at 2112.157 kb on - strandat 2112.675 kb on - strandat 2112.980 kb on - strand, within Shew_1836

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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2,112,157 - -0.2
2,112,675 - +1.1
2,112,980 - Shew_1836 0.15 -0.2

Or see this region's nucleotide sequence