Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1739 and Shew_1740 are separated by 95 nucleotides Shew_1740 and Shew_1741 are separated by 257 nucleotides Shew_1741 and Shew_1742 are separated by 40 nucleotides Shew_1742 and Shew_1743 are separated by 76 nucleotides
Shew_1739: Shew_1739 - DoxX family protein (RefSeq), at 1,989,977 to 1,990,567
_1739
Shew_1740: Shew_1740 - nitroreductase (RefSeq), at 1,990,663 to 1,991,211
_1740
Shew_1741: Shew_1741 - beta-lactamase domain-containing protein (RefSeq), at 1,991,469 to 1,992,200
_1741
Shew_1742: Shew_1742 - methyl-accepting chemotaxis protein (RefSeq), at 1,992,241 to 1,992,858
_1742
Shew_1743: Shew_1743 - GCN5-related N-acetyltransferase (RefSeq), at 1,992,935 to 1,993,438
_1743
Position (kb) 1991
1992
1993 Strain fitness (log2 ratio) -2
-1
0
1 at 1990.569 kb on - strand at 1991.908 kb on + strand, within Shew_1741 at 1991.920 kb on + strand, within Shew_1741 at 1991.928 kb on - strand, within Shew_1741 at 1992.058 kb on - strand, within Shew_1741 at 1992.611 kb on + strand, within Shew_1742 at 1992.993 kb on + strand, within Shew_1743 at 1993.059 kb on + strand, within Shew_1743 at 1993.067 kb on - strand, within Shew_1743
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 1,990,569 - +0.0 1,991,908 + Shew_1741 0.60 -2.0 1,991,920 + Shew_1741 0.62 -0.4 1,991,928 - Shew_1741 0.63 +1.0 1,992,058 - Shew_1741 0.80 -2.3 1,992,611 + Shew_1742 0.60 +0.4 1,992,993 + Shew_1743 0.12 +0.5 1,993,059 + Shew_1743 0.25 +0.3 1,993,067 - Shew_1743 0.26 +0.4
Or see this region's nucleotide sequence