Strain Fitness in Shewanella loihica PV-4 around Shew_1663

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1662 and Shew_1663 are separated by 57 nucleotidesShew_1663 and Shew_1664 are separated by 40 nucleotidesShew_1664 and Shew_1665 are separated by 95 nucleotides Shew_1662: Shew_1662 - NAD-dependent deacetylase (RefSeq), at 1,911,767 to 1,912,513 _1662 Shew_1663: Shew_1663 - hypothetical protein (RefSeq), at 1,912,571 to 1,913,092 _1663 Shew_1664: Shew_1664 - hypothetical protein (RefSeq), at 1,913,133 to 1,913,420 _1664 Shew_1665: Shew_1665 - peptidase S51, dipeptidase E (RefSeq), at 1,913,516 to 1,914,202 _1665 Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -2 -1 0 1at 1912.172 kb on - strand, within Shew_1662at 1912.967 kb on - strand, within Shew_1663at 1912.967 kb on - strand, within Shew_1663at 1913.052 kb on + strandat 1913.086 kb on + strandat 1913.086 kb on + strandat 1913.579 kb on - strandat 1913.758 kb on - strand, within Shew_1665

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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1,912,172 - Shew_1662 0.54 -0.1
1,912,967 - Shew_1663 0.76 -2.0
1,912,967 - Shew_1663 0.76 -0.9
1,913,052 + +0.9
1,913,086 + +0.5
1,913,086 + +0.3
1,913,579 - +0.6
1,913,758 - Shew_1665 0.35 +0.3

Or see this region's nucleotide sequence