Strain Fitness in Shewanella loihica PV-4 around Shew_1593

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1592 and Shew_1593 are separated by 127 nucleotidesShew_1593 and Shew_1594 are separated by 569 nucleotides Shew_1592: Shew_1592 - sulphate transporter (RefSeq), at 1,821,719 to 1,823,278 _1592 Shew_1593: Shew_1593 - ribonuclease (RefSeq), at 1,823,406 to 1,826,792 _1593 Shew_1594: Shew_1594 - RluA family pseudouridine synthase (RefSeq), at 1,827,362 to 1,828,351 _1594 Position (kb) 1823 1824 1825 1826 1827Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1822.587 kb on - strand, within Shew_1592at 1823.228 kb on + strandat 1823.241 kb on - strandat 1823.551 kb on - strandat 1823.631 kb on - strandat 1823.881 kb on - strand, within Shew_1593at 1824.430 kb on + strand, within Shew_1593at 1827.352 kb on + strandat 1827.427 kb on + strandat 1827.442 kb on + strandat 1827.450 kb on - strandat 1827.713 kb on - strand, within Shew_1594

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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1,822,587 - Shew_1592 0.56 -0.1
1,823,228 + +0.1
1,823,241 - +0.0
1,823,551 - -3.9
1,823,631 - +0.8
1,823,881 - Shew_1593 0.14 -0.3
1,824,430 + Shew_1593 0.30 -2.9
1,827,352 + +1.3
1,827,427 + -4.3
1,827,442 + -1.9
1,827,450 - -0.1
1,827,713 - Shew_1594 0.35 -2.7

Or see this region's nucleotide sequence