Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1279 and Shew_1280 are separated by 279 nucleotides Shew_1280 and Shew_1281 overlap by 41 nucleotides Shew_1281 and Shew_1282 are separated by 617 nucleotides Shew_1282 and Shew_1283 are separated by 127 nucleotides
Shew_1279: Shew_1279 - hypothetical protein (RefSeq), at 1,479,636 to 1,480,460
_1279
Shew_1280: Shew_1280 - CopG family transcriptional regulator (RefSeq), at 1,480,740 to 1,481,165
_1280
Shew_1281: Shew_1281 - hypothetical protein (RefSeq), at 1,481,125 to 1,481,868
_1281
Shew_1282: Shew_1282 - hypothetical protein (RefSeq), at 1,482,486 to 1,482,710
_1282
Shew_1283: Shew_1283 - NrfJ-related protein (RefSeq), at 1,482,838 to 1,483,140
_1283
Position (kb)
1481
1482 Strain fitness (log2 ratio)
-2
-1
0
1 at 1480.426 kb on + strand at 1480.441 kb on + strand at 1480.614 kb on - strand at 1480.641 kb on + strand at 1480.750 kb on + strand at 1480.889 kb on + strand, within Shew_1280 at 1480.897 kb on - strand, within Shew_1280 at 1480.897 kb on - strand, within Shew_1280 at 1481.122 kb on + strand, within Shew_1280 at 1481.122 kb on + strand, within Shew_1280 at 1481.414 kb on + strand, within Shew_1281 at 1481.640 kb on - strand, within Shew_1281 at 1482.082 kb on + strand at 1482.464 kb on - strand at 1482.648 kb on + strand, within Shew_1282 at 1482.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 1,480,426 + +0.7 1,480,441 + +0.4 1,480,614 - +0.4 1,480,641 + +0.3 1,480,750 + +1.0 1,480,889 + Shew_1280 0.35 +0.5 1,480,897 - Shew_1280 0.37 +0.2 1,480,897 - Shew_1280 0.37 +0.7 1,481,122 + Shew_1280 0.90 -2.1 1,481,122 + Shew_1280 0.90 +1.0 1,481,414 + Shew_1281 0.39 +0.1 1,481,640 - Shew_1281 0.69 +1.2 1,482,082 + +0.1 1,482,464 - -0.5 1,482,648 + Shew_1282 0.72 -0.1 1,482,817 - -0.0
Or see this region's nucleotide sequence