Strain Fitness in Shewanella loihica PV-4 around Shew_1052

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1050 and Shew_1051 are separated by 7 nucleotidesShew_1051 and Shew_1052 are separated by 108 nucleotidesShew_1052 and Shew_1053 are separated by 153 nucleotides Shew_1050: Shew_1050 - sigma E regulatory protein, MucB/RseB (RefSeq), at 1,212,546 to 1,213,478 _1050 Shew_1051: Shew_1051 - positive regulator of sigma E, RseC/MucC (RefSeq), at 1,213,486 to 1,213,962 _1051 Shew_1052: Shew_1052 - GTP-binding protein LepA (RefSeq), at 1,214,071 to 1,215,861 _1052 Shew_1053: Shew_1053 - signal peptidase I (RefSeq), at 1,216,015 to 1,216,932 _1053 Position (kb) 1214 1215 1216Strain fitness (log2 ratio) -2 -1 0 1at 1214.271 kb on - strand, within Shew_1052at 1214.390 kb on + strand, within Shew_1052at 1214.736 kb on + strand, within Shew_1052at 1214.812 kb on + strand, within Shew_1052at 1215.592 kb on + strand, within Shew_1052at 1215.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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1,214,271 - Shew_1052 0.11 -0.4
1,214,390 + Shew_1052 0.18 -1.0
1,214,736 + Shew_1052 0.37 -2.0
1,214,812 + Shew_1052 0.41 -1.5
1,215,592 + Shew_1052 0.85 -1.5
1,215,943 - -0.1

Or see this region's nucleotide sequence