Strain Fitness in Shewanella loihica PV-4 around Shew_1040

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1039 and Shew_1040 are separated by 104 nucleotidesShew_1040 and thyA are separated by 122 nucleotides Shew_1039: Shew_1039 - phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq), at 1,201,791 to 1,204,022 _1039 Shew_1040: Shew_1040 - hypothetical protein (RefSeq), at 1,204,127 to 1,204,921 _1040 Shew_1041: thyA - thymidylate synthase (RefSeq), at 1,205,044 to 1,205,895 thyA Position (kb) 1204 1205Strain fitness (log2 ratio) -1 0 1 2at 1203.401 kb on + strand, within Shew_1039at 1203.401 kb on + strand, within Shew_1039at 1203.409 kb on - strand, within Shew_1039at 1203.499 kb on + strand, within Shew_1039at 1203.712 kb on - strand, within Shew_1039at 1203.844 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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1,203,401 + Shew_1039 0.72 +1.1
1,203,401 + Shew_1039 0.72 -1.7
1,203,409 - Shew_1039 0.72 +2.0
1,203,499 + Shew_1039 0.77 +0.3
1,203,712 - Shew_1039 0.86 +1.2
1,203,844 + -0.6

Or see this region's nucleotide sequence