Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1004 and Shew_1005 are separated by 32 nucleotides Shew_1005 and Shew_1006 are separated by 93 nucleotides Shew_1006 and Shew_1007 are separated by 297 nucleotides Shew_1007 and Shew_1008 are separated by 209 nucleotides
Shew_1004: Shew_1004 - undecaprenyl pyrophosphate phosphatase (RefSeq), at 1,161,251 to 1,162,051
_1004
Shew_1005: Shew_1005 - rRNA (guanine-N(1)-)-methyltransferase (RefSeq), at 1,162,084 to 1,162,908
_1005
Shew_1006: Shew_1006 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 1,163,002 to 1,163,943
_1006
Shew_1007: Shew_1007 - major outer membrane lipoprotein, putative (RefSeq), at 1,164,241 to 1,164,507
_1007
Shew_1008: Shew_1008 - metal dependent phosphohydrolase (RefSeq), at 1,164,717 to 1,165,958
_1008
Position (kb)
1163
1164 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1162.025 kb on + strand at 1162.147 kb on + strand at 1162.155 kb on - strand at 1162.221 kb on + strand, within Shew_1005 at 1162.673 kb on + strand, within Shew_1005 at 1162.710 kb on + strand, within Shew_1005 at 1162.718 kb on - strand, within Shew_1005 at 1162.718 kb on - strand, within Shew_1005 at 1162.718 kb on - strand, within Shew_1005 at 1162.732 kb on - strand, within Shew_1005 at 1163.170 kb on + strand, within Shew_1006 at 1163.982 kb on - strand at 1164.079 kb on - strand at 1164.440 kb on - strand, within Shew_1007
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 1,162,025 + -2.4 1,162,147 + -0.4 1,162,155 - +1.5 1,162,221 + Shew_1005 0.17 -1.1 1,162,673 + Shew_1005 0.71 -0.4 1,162,710 + Shew_1005 0.76 -0.7 1,162,718 - Shew_1005 0.77 -2.0 1,162,718 - Shew_1005 0.77 -0.2 1,162,718 - Shew_1005 0.77 +0.0 1,162,732 - Shew_1005 0.79 -0.0 1,163,170 + Shew_1006 0.18 -1.2 1,163,982 - +0.4 1,164,079 - +0.7 1,164,440 - Shew_1007 0.75 -4.2
Or see this region's nucleotide sequence