Strain Fitness in Shewanella loihica PV-4 around Shew_0903

Experiment: Chlorite 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0902 and Shew_0903 are separated by 182 nucleotidesShew_0903 and Shew_0904 are separated by 530 nucleotides Shew_0902: Shew_0902 - (acyl-carrier-protein) S-malonyltransferase (RefSeq), at 1,023,678 to 1,024,772 _0902 Shew_0903: Shew_0903 - GCN5-related N-acetyltransferase (RefSeq), at 1,024,955 to 1,025,476 _0903 Shew_0904: Shew_0904 - GPR1/FUN34/yaaH family protein (RefSeq), at 1,026,007 to 1,026,573 _0904 Position (kb) 1024 1025 1026Strain fitness (log2 ratio) -1 0 1at 1024.177 kb on - strand, within Shew_0902at 1024.251 kb on - strand, within Shew_0902at 1024.524 kb on - strand, within Shew_0902at 1024.685 kb on + strandat 1024.774 kb on - strandat 1024.811 kb on + strandat 1024.844 kb on + strandat 1025.005 kb on + strandat 1025.051 kb on - strand, within Shew_0903at 1025.146 kb on + strand, within Shew_0903at 1025.202 kb on - strand, within Shew_0903at 1025.287 kb on - strand, within Shew_0903at 1025.652 kb on - strandat 1025.921 kb on + strandat 1026.266 kb on - strand, within Shew_0904

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
remove
1,024,177 - Shew_0902 0.46 -0.1
1,024,251 - Shew_0902 0.52 -1.0
1,024,524 - Shew_0902 0.77 +0.7
1,024,685 + +0.2
1,024,774 - -0.3
1,024,811 + +0.2
1,024,844 + +0.5
1,025,005 + -1.7
1,025,051 - Shew_0903 0.18 +0.2
1,025,146 + Shew_0903 0.37 +1.1
1,025,202 - Shew_0903 0.47 +0.1
1,025,287 - Shew_0903 0.64 +0.2
1,025,652 - +0.1
1,025,921 + -0.9
1,026,266 - Shew_0904 0.46 +0.3

Or see this region's nucleotide sequence