Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0888 and Shew_0889 are separated by 267 nucleotides Shew_0889 and Shew_0890 are separated by 1 nucleotides Shew_0890 and Shew_0891 are separated by 114 nucleotides
Shew_0888: Shew_0888 - no description, at 1,008,328 to 1,009,505
_0888
Shew_0889: Shew_0889 - hypothetical protein (RefSeq), at 1,009,773 to 1,010,162
_0889
Shew_0890: Shew_0890 - secretion protein HlyD family protein (RefSeq), at 1,010,164 to 1,011,300
_0890
Shew_0891: Shew_0891 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,011,415 to 1,012,728
_0891
Position (kb)
1010
1011
1012 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1009.619 kb on - strand at 1009.935 kb on - strand, within Shew_0889 at 1010.060 kb on + strand, within Shew_0889 at 1010.505 kb on + strand, within Shew_0890 at 1010.512 kb on - strand, within Shew_0890 at 1010.547 kb on + strand, within Shew_0890 at 1010.550 kb on - strand, within Shew_0890 at 1010.884 kb on - strand, within Shew_0890 at 1011.123 kb on + strand, within Shew_0890 at 1011.748 kb on + strand, within Shew_0891 at 1012.117 kb on - strand, within Shew_0891 at 1012.117 kb on - strand, within Shew_0891
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 1,009,619 - +0.0 1,009,935 - Shew_0889 0.42 -2.7 1,010,060 + Shew_0889 0.74 +0.3 1,010,505 + Shew_0890 0.30 +0.5 1,010,512 - Shew_0890 0.31 +0.5 1,010,547 + Shew_0890 0.34 +0.8 1,010,550 - Shew_0890 0.34 -0.1 1,010,884 - Shew_0890 0.63 +1.0 1,011,123 + Shew_0890 0.84 +2.2 1,011,748 + Shew_0891 0.25 +0.3 1,012,117 - Shew_0891 0.53 +0.1 1,012,117 - Shew_0891 0.53 +0.0
Or see this region's nucleotide sequence