Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0861 and Shew_0862 are separated by 157 nucleotides Shew_0862 and Shew_0863 are separated by 1 nucleotides
Shew_0861: Shew_0861 - extracellular solute-binding protein (RefSeq), at 981,749 to 982,756
_0861
Shew_0862: Shew_0862 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 982,914 to 984,545
_0862
Shew_0863: Shew_0863 - ABC transporter-related protein (RefSeq), at 984,547 to 985,575
_0863
Position (kb) 982
983
984
985 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 981.925 kb on - strand, within Shew_0861 at 982.047 kb on + strand, within Shew_0861 at 982.060 kb on - strand, within Shew_0861 at 982.131 kb on + strand, within Shew_0861 at 982.131 kb on + strand, within Shew_0861 at 982.435 kb on + strand, within Shew_0861 at 982.443 kb on - strand, within Shew_0861 at 982.674 kb on - strand at 983.106 kb on - strand, within Shew_0862 at 983.431 kb on + strand, within Shew_0862 at 983.431 kb on + strand, within Shew_0862 at 983.860 kb on + strand, within Shew_0862 at 984.130 kb on + strand, within Shew_0862 at 984.223 kb on + strand, within Shew_0862 at 984.560 kb on + strand at 984.608 kb on + strand at 984.616 kb on - strand at 984.902 kb on - strand, within Shew_0863 at 984.951 kb on - strand, within Shew_0863 at 985.096 kb on - strand, within Shew_0863 at 985.096 kb on - strand, within Shew_0863 at 985.170 kb on + strand, within Shew_0863 at 985.192 kb on + strand, within Shew_0863 at 985.212 kb on + strand, within Shew_0863 at 985.282 kb on - strand, within Shew_0863 at 985.321 kb on + strand, within Shew_0863 at 985.421 kb on - strand, within Shew_0863 at 985.424 kb on + strand, within Shew_0863 at 985.430 kb on - strand, within Shew_0863
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 981,925 - Shew_0861 0.17 +0.1 982,047 + Shew_0861 0.30 -2.7 982,060 - Shew_0861 0.31 -0.7 982,131 + Shew_0861 0.38 -0.8 982,131 + Shew_0861 0.38 -1.9 982,435 + Shew_0861 0.68 -0.8 982,443 - Shew_0861 0.69 -0.8 982,674 - -0.2 983,106 - Shew_0862 0.12 -0.4 983,431 + Shew_0862 0.32 -0.9 983,431 + Shew_0862 0.32 -0.5 983,860 + Shew_0862 0.58 -0.6 984,130 + Shew_0862 0.75 -2.2 984,223 + Shew_0862 0.80 +0.1 984,560 + +1.5 984,608 + +1.1 984,616 - -1.3 984,902 - Shew_0863 0.34 -0.6 984,951 - Shew_0863 0.39 -1.1 985,096 - Shew_0863 0.53 -1.5 985,096 - Shew_0863 0.53 -1.0 985,170 + Shew_0863 0.61 +0.9 985,192 + Shew_0863 0.63 +1.6 985,212 + Shew_0863 0.65 +1.5 985,282 - Shew_0863 0.71 -1.0 985,321 + Shew_0863 0.75 +1.7 985,421 - Shew_0863 0.85 -0.8 985,424 + Shew_0863 0.85 +5.4 985,430 - Shew_0863 0.86 -0.3
Or see this region's nucleotide sequence