Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0608 and Shew_0609 are separated by 290 nucleotides Shew_0609 and Shew_0610 are separated by 203 nucleotides
Shew_0608: Shew_0608 - molybdopterin oxidoreductase (RefSeq), at 686,458 to 688,740
_0608
Shew_0609: Shew_0609 - two component LuxR family transcriptional regulator (RefSeq), at 689,031 to 689,630
_0609
Shew_0610: Shew_0610 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 689,834 to 691,714
_0610
Position (kb) 689
690 Strain fitness (log2 ratio) -2
-1
0
1
2 at 688.335 kb on + strand, within Shew_0608 at 688.449 kb on + strand, within Shew_0608 at 688.465 kb on + strand, within Shew_0608 at 688.470 kb on + strand, within Shew_0608 at 688.624 kb on + strand at 688.779 kb on - strand at 688.869 kb on + strand at 689.090 kb on + strand at 689.198 kb on + strand, within Shew_0609 at 689.392 kb on - strand, within Shew_0609 at 689.549 kb on + strand, within Shew_0609 at 689.557 kb on - strand, within Shew_0609 at 689.679 kb on + strand at 689.687 kb on - strand at 689.808 kb on - strand at 690.174 kb on + strand, within Shew_0610 at 690.496 kb on + strand, within Shew_0610 at 690.496 kb on + strand, within Shew_0610 at 690.504 kb on - strand, within Shew_0610 at 690.612 kb on - strand, within Shew_0610
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 688,335 + Shew_0608 0.82 -0.5 688,449 + Shew_0608 0.87 +0.5 688,465 + Shew_0608 0.88 -0.1 688,470 + Shew_0608 0.88 -0.7 688,624 + +0.4 688,779 - -1.3 688,869 + +0.3 689,090 + +0.2 689,198 + Shew_0609 0.28 -0.0 689,392 - Shew_0609 0.60 +0.6 689,549 + Shew_0609 0.86 +0.6 689,557 - Shew_0609 0.88 +0.6 689,679 + +1.1 689,687 - +0.3 689,808 - -0.3 690,174 + Shew_0610 0.18 +1.5 690,496 + Shew_0610 0.35 -1.9 690,496 + Shew_0610 0.35 +0.1 690,504 - Shew_0610 0.36 +2.1 690,612 - Shew_0610 0.41 +0.7
Or see this region's nucleotide sequence