Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0507 and Shew_0508 are separated by 73 nucleotides Shew_0508 and Shew_0509 are separated by 265 nucleotides Shew_0509 and Shew_0510 are separated by 52 nucleotides
Shew_0507: Shew_0507 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 565,616 to 566,707
_0507
Shew_0508: Shew_0508 - xanthine/uracil/vitamin C permease (RefSeq), at 566,781 to 567,938
_0508
Shew_0509: Shew_0509 - hypothetical protein (RefSeq), at 568,204 to 568,629
_0509
Shew_0510: Shew_0510 - putative outer membrane adhesin like proteiin (RefSeq), at 568,682 to 577,120
_0510
Position (kb) 566
567
568 Strain fitness (log2 ratio) -2
-1
0
1
2 at 565.830 kb on + strand, within Shew_0507 at 565.909 kb on + strand, within Shew_0507 at 565.917 kb on - strand, within Shew_0507 at 566.090 kb on + strand, within Shew_0507 at 566.103 kb on - strand, within Shew_0507 at 566.344 kb on - strand, within Shew_0507 at 566.613 kb on - strand at 567.025 kb on + strand, within Shew_0508 at 567.025 kb on + strand, within Shew_0508 at 567.033 kb on - strand, within Shew_0508 at 567.033 kb on - strand, within Shew_0508 at 567.044 kb on + strand, within Shew_0508 at 567.065 kb on + strand, within Shew_0508 at 567.073 kb on - strand, within Shew_0508 at 567.073 kb on - strand, within Shew_0508 at 567.397 kb on + strand, within Shew_0508 at 567.595 kb on - strand, within Shew_0508 at 567.665 kb on - strand, within Shew_0508 at 567.680 kb on - strand, within Shew_0508 at 567.774 kb on - strand, within Shew_0508 at 568.067 kb on + strand at 568.440 kb on - strand, within Shew_0509 at 568.442 kb on + strand, within Shew_0509 at 568.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 565,830 + Shew_0507 0.20 +1.0 565,909 + Shew_0507 0.27 +0.2 565,917 - Shew_0507 0.28 -0.3 566,090 + Shew_0507 0.43 +0.2 566,103 - Shew_0507 0.45 -1.1 566,344 - Shew_0507 0.67 +0.0 566,613 - -0.8 567,025 + Shew_0508 0.21 +2.0 567,025 + Shew_0508 0.21 +1.1 567,033 - Shew_0508 0.22 +2.3 567,033 - Shew_0508 0.22 +1.6 567,044 + Shew_0508 0.23 +0.2 567,065 + Shew_0508 0.25 +0.7 567,073 - Shew_0508 0.25 +0.5 567,073 - Shew_0508 0.25 +0.2 567,397 + Shew_0508 0.53 +0.0 567,595 - Shew_0508 0.70 +0.1 567,665 - Shew_0508 0.76 -0.2 567,680 - Shew_0508 0.78 -1.6 567,774 - Shew_0508 0.86 +0.2 568,067 + +0.5 568,440 - Shew_0509 0.55 +0.8 568,442 + Shew_0509 0.56 +0.5 568,871 - -2.7
Or see this region's nucleotide sequence