Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0389 and Shew_0390 are separated by 4 nucleotides Shew_0390 and Shew_0391 overlap by 4 nucleotides
Shew_0389: Shew_0389 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 438,699 to 440,390
_0389
Shew_0390: Shew_0390 - MSHA biogenesis protein MshM (RefSeq), at 440,395 to 441,300
_0390
Shew_0391: Shew_0391 - TPR repeat-containing protein (RefSeq), at 441,297 to 442,457
_0391
Position (kb) 440
441
442 Strain fitness (log2 ratio) -2
-1
0
1
2 at 439.402 kb on - strand, within Shew_0389 at 439.402 kb on - strand, within Shew_0389 at 439.402 kb on - strand, within Shew_0389 at 439.406 kb on + strand, within Shew_0389 at 439.520 kb on + strand, within Shew_0389 at 439.528 kb on - strand, within Shew_0389 at 439.643 kb on + strand, within Shew_0389 at 439.753 kb on - strand, within Shew_0389 at 439.766 kb on - strand, within Shew_0389 at 439.816 kb on + strand, within Shew_0389 at 439.853 kb on + strand, within Shew_0389 at 440.000 kb on + strand, within Shew_0389 at 440.075 kb on - strand, within Shew_0389 at 440.280 kb on - strand at 440.342 kb on + strand at 440.846 kb on - strand, within Shew_0390 at 441.247 kb on + strand at 441.413 kb on - strand, within Shew_0391 at 441.463 kb on - strand, within Shew_0391 at 441.751 kb on - strand, within Shew_0391 at 441.763 kb on - strand, within Shew_0391 at 441.768 kb on + strand, within Shew_0391 at 441.773 kb on + strand, within Shew_0391 at 441.832 kb on - strand, within Shew_0391 at 441.941 kb on + strand, within Shew_0391 at 442.038 kb on - strand, within Shew_0391 at 442.049 kb on + strand, within Shew_0391 at 442.049 kb on + strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 439,402 - Shew_0389 0.42 +0.7 439,402 - Shew_0389 0.42 -2.4 439,402 - Shew_0389 0.42 +0.8 439,406 + Shew_0389 0.42 -0.4 439,520 + Shew_0389 0.49 -0.1 439,528 - Shew_0389 0.49 +0.8 439,643 + Shew_0389 0.56 +2.1 439,753 - Shew_0389 0.62 +0.3 439,766 - Shew_0389 0.63 +0.1 439,816 + Shew_0389 0.66 -1.6 439,853 + Shew_0389 0.68 +0.6 440,000 + Shew_0389 0.77 -0.8 440,075 - Shew_0389 0.81 -1.6 440,280 - +0.1 440,342 + +0.2 440,846 - Shew_0390 0.50 +1.4 441,247 + +0.4 441,413 - Shew_0391 0.10 +0.0 441,463 - Shew_0391 0.14 +0.9 441,751 - Shew_0391 0.39 -0.3 441,763 - Shew_0391 0.40 +0.6 441,768 + Shew_0391 0.41 -0.3 441,773 + Shew_0391 0.41 +1.1 441,832 - Shew_0391 0.46 -0.1 441,941 + Shew_0391 0.55 +0.7 442,038 - Shew_0391 0.64 -1.0 442,049 + Shew_0391 0.65 -0.7 442,049 + Shew_0391 0.65 +0.3 442,057 - Shew_0391 0.65 -0.1 442,057 - Shew_0391 0.65 +1.8 442,057 - Shew_0391 0.65 +0.5 442,057 - Shew_0391 0.65 +0.4 442,057 - Shew_0391 0.65 +0.6 442,057 - Shew_0391 0.65 +0.4 442,057 - Shew_0391 0.65 -0.7 442,057 - Shew_0391 0.65 +0.4
Or see this region's nucleotide sequence