Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0222 and Shew_0223 are separated by 125 nucleotides Shew_0223 and Shew_0224 are separated by 21 nucleotides Shew_0224 and Shew_0225 overlap by 4 nucleotides
Shew_0222: Shew_0222 - LysR family transcriptional regulator (RefSeq), at 236,089 to 236,964
_0222
Shew_0223: Shew_0223 - hypothetical protein (RefSeq), at 237,090 to 237,959
_0223
Shew_0224: Shew_0224 - transport-associated (RefSeq), at 237,981 to 238,550
_0224
Shew_0225: Shew_0225 - phosphoheptose isomerase (RefSeq), at 238,547 to 239,140
_0225
Position (kb) 237
238 Strain fitness (log2 ratio) -1
0
1 at 236.123 kb on + strand at 236.251 kb on + strand, within Shew_0222 at 236.360 kb on - strand, within Shew_0222 at 236.399 kb on - strand, within Shew_0222 at 236.673 kb on - strand, within Shew_0222 at 236.818 kb on - strand, within Shew_0222 at 236.836 kb on - strand, within Shew_0222 at 237.118 kb on + strand at 237.322 kb on + strand, within Shew_0223 at 237.388 kb on - strand, within Shew_0223 at 237.693 kb on + strand, within Shew_0223 at 237.693 kb on + strand, within Shew_0223 at 237.705 kb on + strand, within Shew_0223 at 237.711 kb on - strand, within Shew_0223 at 237.768 kb on + strand, within Shew_0223 at 238.094 kb on - strand, within Shew_0224 at 238.167 kb on - strand, within Shew_0224 at 238.292 kb on + strand, within Shew_0224 at 238.300 kb on - strand, within Shew_0224
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 236,123 + +0.0 236,251 + Shew_0222 0.18 -0.2 236,360 - Shew_0222 0.31 -1.1 236,399 - Shew_0222 0.35 -1.1 236,673 - Shew_0222 0.67 -0.2 236,818 - Shew_0222 0.83 -0.4 236,836 - Shew_0222 0.85 -0.0 237,118 + +0.2 237,322 + Shew_0223 0.27 +0.3 237,388 - Shew_0223 0.34 +0.0 237,693 + Shew_0223 0.69 +1.4 237,693 + Shew_0223 0.69 +0.4 237,705 + Shew_0223 0.71 +0.6 237,711 - Shew_0223 0.71 +0.9 237,768 + Shew_0223 0.78 +0.7 238,094 - Shew_0224 0.20 -0.3 238,167 - Shew_0224 0.33 -0.9 238,292 + Shew_0224 0.55 +1.2 238,300 - Shew_0224 0.56 -0.2
Or see this region's nucleotide sequence