Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0059 and Shew_0060 are separated by 27 nucleotides Shew_0060 and Shew_0061 are separated by 50 nucleotides
Shew_0059: Shew_0059 - molybdopterin oxidoreductase (RefSeq), at 69,872 to 72,721
_0059
Shew_0060: Shew_0060 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 72,749 to 73,339
_0060
Shew_0061: Shew_0061 - formate dehydrogenase, gamma subunit (RefSeq), at 73,390 to 74,397
_0061
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 71.953 kb on + strand, within Shew_0059 at 71.970 kb on - strand, within Shew_0059 at 72.064 kb on + strand, within Shew_0059 at 72.122 kb on - strand, within Shew_0059 at 72.192 kb on - strand, within Shew_0059 at 72.204 kb on - strand, within Shew_0059 at 72.204 kb on - strand, within Shew_0059 at 72.261 kb on + strand, within Shew_0059 at 72.261 kb on + strand, within Shew_0059 at 72.266 kb on + strand, within Shew_0059 at 72.269 kb on - strand, within Shew_0059 at 72.271 kb on + strand, within Shew_0059 at 72.372 kb on - strand, within Shew_0059 at 72.415 kb on + strand, within Shew_0059 at 72.556 kb on - strand at 72.614 kb on - strand at 72.629 kb on - strand at 72.644 kb on + strand at 72.987 kb on + strand, within Shew_0060 at 72.987 kb on + strand, within Shew_0060 at 72.987 kb on + strand, within Shew_0060 at 72.995 kb on - strand, within Shew_0060 at 73.003 kb on - strand, within Shew_0060 at 73.133 kb on + strand, within Shew_0060 at 73.141 kb on - strand, within Shew_0060 at 73.206 kb on + strand, within Shew_0060 at 73.365 kb on - strand at 73.374 kb on + strand at 73.638 kb on + strand, within Shew_0061 at 73.828 kb on + strand, within Shew_0061 at 73.836 kb on - strand, within Shew_0061 at 73.853 kb on - strand, within Shew_0061 at 73.988 kb on + strand, within Shew_0061 at 73.996 kb on - strand, within Shew_0061 at 74.048 kb on - strand, within Shew_0061 at 74.119 kb on - strand, within Shew_0061 at 74.119 kb on - strand, within Shew_0061 at 74.130 kb on + strand, within Shew_0061 at 74.295 kb on - strand, within Shew_0061 at 74.330 kb on - strand at 74.330 kb on - strand at 74.332 kb on + strand at 74.332 kb on + strand at 74.332 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 71,953 + Shew_0059 0.73 +1.2 71,970 - Shew_0059 0.74 +1.3 72,064 + Shew_0059 0.77 +1.4 72,122 - Shew_0059 0.79 +1.6 72,192 - Shew_0059 0.81 +0.1 72,204 - Shew_0059 0.82 +1.5 72,204 - Shew_0059 0.82 +1.4 72,261 + Shew_0059 0.84 +1.1 72,261 + Shew_0059 0.84 +0.6 72,266 + Shew_0059 0.84 +1.6 72,269 - Shew_0059 0.84 +1.6 72,271 + Shew_0059 0.84 +1.6 72,372 - Shew_0059 0.88 +1.6 72,415 + Shew_0059 0.89 +1.3 72,556 - +3.7 72,614 - +1.1 72,629 - +2.2 72,644 + +1.5 72,987 + Shew_0060 0.40 +1.5 72,987 + Shew_0060 0.40 +0.4 72,987 + Shew_0060 0.40 +1.4 72,995 - Shew_0060 0.42 +1.2 73,003 - Shew_0060 0.43 +1.5 73,133 + Shew_0060 0.65 +1.3 73,141 - Shew_0060 0.66 +1.0 73,206 + Shew_0060 0.77 +1.0 73,365 - +1.8 73,374 + +0.6 73,638 + Shew_0061 0.25 +0.5 73,828 + Shew_0061 0.43 +1.4 73,836 - Shew_0061 0.44 +0.1 73,853 - Shew_0061 0.46 +0.5 73,988 + Shew_0061 0.59 +1.4 73,996 - Shew_0061 0.60 +1.6 74,048 - Shew_0061 0.65 +0.8 74,119 - Shew_0061 0.72 +1.8 74,119 - Shew_0061 0.72 +1.0 74,130 + Shew_0061 0.73 +0.8 74,295 - Shew_0061 0.90 +1.0 74,330 - -1.1 74,330 - +0.9 74,332 + -2.1 74,332 + +0.1 74,332 + -1.1
Or see this region's nucleotide sequence