Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0031 and Shew_0032 are separated by 9 nucleotides Shew_0032 and Shew_0033 are separated by 222 nucleotides
Shew_0031: Shew_0031 - RND family efflux transporter MFP subunit (RefSeq), at 33,256 to 34,416
_0031
Shew_0032: Shew_0032 - hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq), at 34,426 to 37,575
_0032
Shew_0033: Shew_0033 - peptidase M14, carboxypeptidase A (RefSeq), at 37,798 to 39,639
_0033
Position (kb) 34
35
36
37
38 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 33.426 kb on + strand, within Shew_0031 at 33.432 kb on + strand, within Shew_0031 at 33.526 kb on - strand, within Shew_0031 at 33.559 kb on + strand, within Shew_0031 at 33.588 kb on - strand, within Shew_0031 at 33.618 kb on + strand, within Shew_0031 at 33.626 kb on - strand, within Shew_0031 at 33.626 kb on - strand, within Shew_0031 at 33.849 kb on - strand, within Shew_0031 at 33.943 kb on - strand, within Shew_0031 at 34.358 kb on + strand at 34.366 kb on - strand at 34.565 kb on - strand at 34.585 kb on + strand at 34.802 kb on + strand, within Shew_0032 at 34.802 kb on + strand, within Shew_0032 at 34.810 kb on - strand, within Shew_0032 at 34.840 kb on + strand, within Shew_0032 at 34.985 kb on + strand, within Shew_0032 at 34.985 kb on + strand, within Shew_0032 at 34.985 kb on + strand, within Shew_0032 at 34.993 kb on - strand, within Shew_0032 at 35.223 kb on - strand, within Shew_0032 at 35.313 kb on + strand, within Shew_0032 at 35.384 kb on + strand, within Shew_0032 at 35.395 kb on + strand, within Shew_0032 at 35.561 kb on - strand, within Shew_0032 at 35.762 kb on + strand, within Shew_0032 at 35.877 kb on - strand, within Shew_0032 at 36.056 kb on + strand, within Shew_0032 at 36.262 kb on + strand, within Shew_0032 at 36.548 kb on + strand, within Shew_0032 at 37.182 kb on + strand, within Shew_0032 at 37.182 kb on + strand, within Shew_0032 at 37.207 kb on + strand, within Shew_0032 at 37.296 kb on + strand at 37.960 kb on + strand at 37.968 kb on - strand at 38.118 kb on - strand, within Shew_0033 at 38.295 kb on + strand, within Shew_0033 at 38.564 kb on + strand, within Shew_0033
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 33,426 + Shew_0031 0.15 -4.2 33,432 + Shew_0031 0.15 -2.8 33,526 - Shew_0031 0.23 -3.0 33,559 + Shew_0031 0.26 -4.5 33,588 - Shew_0031 0.29 -4.2 33,618 + Shew_0031 0.31 -3.2 33,626 - Shew_0031 0.32 -0.6 33,626 - Shew_0031 0.32 -5.1 33,849 - Shew_0031 0.51 -2.5 33,943 - Shew_0031 0.59 -3.0 34,358 + -3.4 34,366 - -5.0 34,565 - -3.5 34,585 + -3.3 34,802 + Shew_0032 0.12 -2.5 34,802 + Shew_0032 0.12 -2.9 34,810 - Shew_0032 0.12 -3.7 34,840 + Shew_0032 0.13 -4.2 34,985 + Shew_0032 0.18 -2.7 34,985 + Shew_0032 0.18 -4.8 34,985 + Shew_0032 0.18 -3.9 34,993 - Shew_0032 0.18 -4.0 35,223 - Shew_0032 0.25 -1.9 35,313 + Shew_0032 0.28 -4.5 35,384 + Shew_0032 0.30 -1.9 35,395 + Shew_0032 0.31 -4.1 35,561 - Shew_0032 0.36 -4.8 35,762 + Shew_0032 0.42 -3.6 35,877 - Shew_0032 0.46 -3.3 36,056 + Shew_0032 0.52 -4.2 36,262 + Shew_0032 0.58 -3.3 36,548 + Shew_0032 0.67 -5.7 37,182 + Shew_0032 0.87 -5.4 37,182 + Shew_0032 0.87 -1.7 37,207 + Shew_0032 0.88 -3.4 37,296 + -4.0 37,960 + -0.1 37,968 - +0.6 38,118 - Shew_0033 0.17 -0.5 38,295 + Shew_0033 0.27 -0.0 38,564 + Shew_0033 0.42 -1.3
Or see this region's nucleotide sequence