Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_772 and Pf6N2E2_773 are separated by 273 nucleotides Pf6N2E2_773 and Pf6N2E2_774 overlap by 4 nucleotides Pf6N2E2_774 and Pf6N2E2_775 are separated by 4 nucleotides Pf6N2E2_775 and Pf6N2E2_776 overlap by 4 nucleotides
Pf6N2E2_772 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 882,325 to 883,959
_772
Pf6N2E2_773 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 884,233 to 885,063
_773
Pf6N2E2_774 - Cold-shock DNA-binding domain, at 885,060 to 885,479
_774
Pf6N2E2_775 - FIG00955061: hypothetical protein, at 885,484 to 885,834
_775
Pf6N2E2_776 - Transcriptional regulator, LysR family, at 885,831 to 886,739
_776
Position (kb) 884
885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 883.427 kb on + strand, within Pf6N2E2_772 at 883.428 kb on - strand, within Pf6N2E2_772 at 883.475 kb on + strand, within Pf6N2E2_772 at 883.475 kb on + strand, within Pf6N2E2_772 at 883.475 kb on + strand, within Pf6N2E2_772 at 883.475 kb on + strand, within Pf6N2E2_772 at 883.476 kb on - strand, within Pf6N2E2_772 at 883.523 kb on + strand, within Pf6N2E2_772 at 883.524 kb on - strand, within Pf6N2E2_772 at 883.524 kb on - strand, within Pf6N2E2_772 at 883.524 kb on - strand, within Pf6N2E2_772 at 883.683 kb on - strand, within Pf6N2E2_772 at 883.697 kb on + strand, within Pf6N2E2_772 at 883.698 kb on - strand, within Pf6N2E2_772 at 883.698 kb on - strand, within Pf6N2E2_772 at 883.712 kb on - strand, within Pf6N2E2_772 at 883.778 kb on + strand, within Pf6N2E2_772 at 883.779 kb on - strand, within Pf6N2E2_772 at 883.781 kb on + strand, within Pf6N2E2_772 at 883.781 kb on + strand, within Pf6N2E2_772 at 883.864 kb on - strand at 883.864 kb on - strand at 883.864 kb on - strand at 883.953 kb on + strand at 883.953 kb on + strand at 883.954 kb on - strand at 883.954 kb on - strand at 883.959 kb on + strand at 883.960 kb on - strand at 883.960 kb on - strand at 883.981 kb on - strand at 883.981 kb on - strand at 883.991 kb on + strand at 883.991 kb on + strand at 884.009 kb on + strand at 884.076 kb on + strand at 884.273 kb on + strand at 884.325 kb on + strand, within Pf6N2E2_773 at 884.325 kb on + strand, within Pf6N2E2_773 at 884.837 kb on - strand, within Pf6N2E2_773 at 884.846 kb on - strand, within Pf6N2E2_773 at 884.846 kb on - strand, within Pf6N2E2_773 at 884.851 kb on + strand, within Pf6N2E2_773 at 884.968 kb on + strand, within Pf6N2E2_773 at 884.968 kb on + strand, within Pf6N2E2_773 at 884.968 kb on + strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 885.469 kb on - strand at 885.485 kb on + strand at 885.486 kb on - strand at 885.486 kb on - strand at 885.624 kb on - strand, within Pf6N2E2_775 at 885.770 kb on + strand, within Pf6N2E2_775 at 885.771 kb on - strand, within Pf6N2E2_775 at 885.771 kb on - strand, within Pf6N2E2_775 at 885.771 kb on - strand, within Pf6N2E2_775 at 885.771 kb on - strand, within Pf6N2E2_775 at 885.771 kb on - strand, within Pf6N2E2_775 at 885.834 kb on + strand at 885.842 kb on + strand at 885.843 kb on - strand at 885.843 kb on - strand at 885.843 kb on - strand at 886.006 kb on + strand, within Pf6N2E2_776 at 886.006 kb on + strand, within Pf6N2E2_776 at 886.006 kb on + strand, within Pf6N2E2_776 at 886.006 kb on + strand, within Pf6N2E2_776 at 886.006 kb on + strand, within Pf6N2E2_776 at 886.006 kb on + strand at 886.006 kb on + strand, within Pf6N2E2_776 at 886.007 kb on - strand, within Pf6N2E2_776 at 886.007 kb on - strand, within Pf6N2E2_776 at 886.007 kb on - strand, within Pf6N2E2_776 at 886.010 kb on + strand, within Pf6N2E2_776 at 886.010 kb on + strand, within Pf6N2E2_776 at 886.011 kb on - strand, within Pf6N2E2_776 at 886.020 kb on + strand, within Pf6N2E2_776
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 883,427 + Pf6N2E2_772 0.67 -0.4 883,428 - Pf6N2E2_772 0.67 -0.2 883,475 + Pf6N2E2_772 0.70 +0.9 883,475 + Pf6N2E2_772 0.70 +1.5 883,475 + Pf6N2E2_772 0.70 -0.4 883,475 + Pf6N2E2_772 0.70 +0.6 883,476 - Pf6N2E2_772 0.70 -0.3 883,523 + Pf6N2E2_772 0.73 +0.8 883,524 - Pf6N2E2_772 0.73 -0.6 883,524 - Pf6N2E2_772 0.73 +1.0 883,524 - Pf6N2E2_772 0.73 +0.8 883,683 - Pf6N2E2_772 0.83 +0.3 883,697 + Pf6N2E2_772 0.84 +0.0 883,698 - Pf6N2E2_772 0.84 +0.3 883,698 - Pf6N2E2_772 0.84 -1.9 883,712 - Pf6N2E2_772 0.85 +0.8 883,778 + Pf6N2E2_772 0.89 -0.1 883,779 - Pf6N2E2_772 0.89 -0.1 883,781 + Pf6N2E2_772 0.89 -1.2 883,781 + Pf6N2E2_772 0.89 +0.8 883,864 - -0.8 883,864 - -1.1 883,864 - +0.2 883,953 + +0.6 883,953 + -0.0 883,954 - +0.3 883,954 - -1.0 883,959 + +2.0 883,960 - -1.8 883,960 - +0.1 883,981 - -1.1 883,981 - +0.5 883,991 + +0.9 883,991 + +1.0 884,009 + +0.3 884,076 + -1.6 884,273 + -1.4 884,325 + Pf6N2E2_773 0.11 -1.1 884,325 + Pf6N2E2_773 0.11 -0.3 884,837 - Pf6N2E2_773 0.73 -0.7 884,846 - Pf6N2E2_773 0.74 -0.9 884,846 - Pf6N2E2_773 0.74 -0.9 884,851 + Pf6N2E2_773 0.74 -1.9 884,968 + Pf6N2E2_773 0.88 -2.0 884,968 + Pf6N2E2_773 0.88 -0.5 884,968 + Pf6N2E2_773 0.88 -3.3 884,969 - Pf6N2E2_773 0.89 -2.8 884,969 - Pf6N2E2_773 0.89 +0.3 884,969 - Pf6N2E2_773 0.89 -0.5 884,969 - Pf6N2E2_773 0.89 -3.2 884,969 - Pf6N2E2_773 0.89 -1.7 884,969 - Pf6N2E2_773 0.89 -1.2 885,469 - +1.0 885,485 + -2.4 885,486 - -2.4 885,486 - +0.7 885,624 - Pf6N2E2_775 0.40 -0.5 885,770 + Pf6N2E2_775 0.81 -0.5 885,771 - Pf6N2E2_775 0.82 -1.1 885,771 - Pf6N2E2_775 0.82 -0.3 885,771 - Pf6N2E2_775 0.82 -0.2 885,771 - Pf6N2E2_775 0.82 +0.8 885,771 - Pf6N2E2_775 0.82 +0.2 885,834 + +2.0 885,842 + +0.5 885,843 - -0.0 885,843 - +0.8 885,843 - -0.2 886,006 + Pf6N2E2_776 0.19 -0.6 886,006 + Pf6N2E2_776 0.19 -2.2 886,006 + Pf6N2E2_776 0.19 +1.0 886,006 + Pf6N2E2_776 0.19 -0.0 886,006 + Pf6N2E2_776 0.19 -0.2 886,006 + +1.8 886,006 + Pf6N2E2_776 0.19 +0.5 886,007 - Pf6N2E2_776 0.19 +0.3 886,007 - Pf6N2E2_776 0.19 -0.2 886,007 - Pf6N2E2_776 0.19 -0.7 886,010 + Pf6N2E2_776 0.20 -0.8 886,010 + Pf6N2E2_776 0.20 -1.3 886,011 - Pf6N2E2_776 0.20 +0.4 886,020 + Pf6N2E2_776 0.21 +0.1
Or see this region's nucleotide sequence