Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_748 and Pf6N2E2_749 are separated by 1 nucleotides Pf6N2E2_749 and Pf6N2E2_750 are separated by 365 nucleotides Pf6N2E2_750 and Pf6N2E2_751 are separated by 51 nucleotides Pf6N2E2_751 and Pf6N2E2_752 are separated by 322 nucleotides
Pf6N2E2_748 - Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine, at 858,082 to 859,005
_748
Pf6N2E2_749 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 859,007 to 859,477
_749
Pf6N2E2_750 - Transcriptional regulator, DeoR family, at 859,843 to 860,559
_750
Pf6N2E2_751 - Electron transfer flavoprotein, beta subunit, at 860,611 to 860,952
_751
Pf6N2E2_752 - Mobile element protein, at 861,275 to 862,543
_752
Position (kb)
859
860
861 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 858.910 kb on + strand, within Pf6N2E2_748 at 858.917 kb on - strand at 858.934 kb on + strand at 858.935 kb on - strand at 858.935 kb on - strand at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.105 kb on - strand, within Pf6N2E2_749 at 859.105 kb on - strand, within Pf6N2E2_749 at 859.443 kb on - strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.807 kb on - strand at 859.807 kb on - strand at 859.851 kb on + strand at 860.017 kb on + strand, within Pf6N2E2_750 at 860.017 kb on + strand, within Pf6N2E2_750 at 860.017 kb on + strand, within Pf6N2E2_750 at 860.018 kb on - strand, within Pf6N2E2_750 at 860.018 kb on - strand, within Pf6N2E2_750 at 860.231 kb on - strand, within Pf6N2E2_750 at 860.573 kb on + strand at 860.573 kb on + strand at 860.573 kb on + strand at 860.573 kb on + strand at 860.574 kb on - strand at 860.574 kb on - strand at 860.574 kb on - strand at 860.574 kb on - strand at 860.574 kb on - strand at 860.574 kb on - strand at 860.574 kb on - strand at 860.720 kb on + strand, within Pf6N2E2_751 at 860.720 kb on + strand, within Pf6N2E2_751 at 860.720 kb on + strand, within Pf6N2E2_751 at 860.721 kb on - strand, within Pf6N2E2_751 at 860.721 kb on - strand, within Pf6N2E2_751 at 860.896 kb on + strand, within Pf6N2E2_751 at 860.897 kb on - strand, within Pf6N2E2_751 at 860.940 kb on + strand at 860.950 kb on + strand at 860.951 kb on - strand at 860.951 kb on - strand at 860.951 kb on - strand at 860.968 kb on + strand at 860.968 kb on + strand at 860.969 kb on - strand at 860.969 kb on - strand at 860.979 kb on + strand at 860.979 kb on + strand at 860.979 kb on + strand at 860.979 kb on + strand at 860.979 kb on + strand at 860.979 kb on + strand at 860.980 kb on - strand at 860.980 kb on - strand at 860.980 kb on - strand at 860.980 kb on - strand at 860.980 kb on - strand at 860.980 kb on - strand at 860.998 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.019 kb on - strand at 861.023 kb on - strand at 861.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 858,910 + Pf6N2E2_748 0.90 -0.3 858,917 - +0.2 858,934 + -0.5 858,935 - +2.2 858,935 - +0.1 859,104 + Pf6N2E2_749 0.21 +0.4 859,104 + Pf6N2E2_749 0.21 +0.7 859,104 + Pf6N2E2_749 0.21 +0.5 859,104 + Pf6N2E2_749 0.21 -0.3 859,104 + Pf6N2E2_749 0.21 -0.7 859,104 + Pf6N2E2_749 0.21 +0.3 859,104 + Pf6N2E2_749 0.21 -0.6 859,105 - Pf6N2E2_749 0.21 +1.1 859,105 - Pf6N2E2_749 0.21 -2.2 859,443 - +1.3 859,754 + +0.1 859,754 + -1.0 859,754 + +1.0 859,754 + +1.2 859,754 + +1.4 859,754 + +0.3 859,754 + +0.4 859,754 + +0.9 859,754 + +0.2 859,755 - -2.7 859,755 - -0.1 859,755 - -2.0 859,755 - -0.3 859,755 - +1.4 859,755 - +0.1 859,755 - +0.9 859,755 - +1.1 859,807 - +1.2 859,807 - -1.7 859,851 + +0.8 860,017 + Pf6N2E2_750 0.24 +1.8 860,017 + Pf6N2E2_750 0.24 -0.2 860,017 + Pf6N2E2_750 0.24 +1.2 860,018 - Pf6N2E2_750 0.24 +0.4 860,018 - Pf6N2E2_750 0.24 +1.8 860,231 - Pf6N2E2_750 0.54 +1.5 860,573 + +0.1 860,573 + -1.7 860,573 + +0.3 860,573 + +0.2 860,574 - +0.9 860,574 - +0.3 860,574 - -1.0 860,574 - +1.1 860,574 - +0.1 860,574 - -2.9 860,574 - +0.0 860,720 + Pf6N2E2_751 0.32 +0.2 860,720 + Pf6N2E2_751 0.32 -0.3 860,720 + Pf6N2E2_751 0.32 +1.8 860,721 - Pf6N2E2_751 0.32 +0.0 860,721 - Pf6N2E2_751 0.32 +0.7 860,896 + Pf6N2E2_751 0.83 +0.8 860,897 - Pf6N2E2_751 0.84 -1.1 860,940 + +0.4 860,950 + -0.2 860,951 - -0.6 860,951 - -2.8 860,951 - +1.2 860,968 + -0.6 860,968 + -0.2 860,969 - -0.3 860,969 - -0.4 860,979 + +1.5 860,979 + +0.8 860,979 + -0.3 860,979 + -3.1 860,979 + -1.0 860,979 + +1.2 860,980 - +1.7 860,980 - -0.3 860,980 - -0.4 860,980 - +0.6 860,980 - -0.6 860,980 - -0.8 860,998 - -0.7 861,019 - +0.0 861,019 - +1.0 861,019 - -0.1 861,019 - +0.2 861,019 - -0.1 861,019 - +0.1 861,019 - +0.4 861,019 - +0.9 861,019 - +0.9 861,019 - +0.6 861,019 - -1.3 861,019 - +0.0 861,019 - +0.2 861,023 - +0.9 861,023 - +0.1
Or see this region's nucleotide sequence