Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_609

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_608 and Pf6N2E2_609 are separated by 349 nucleotidesPf6N2E2_609 and Pf6N2E2_610 are separated by 193 nucleotides Pf6N2E2_608 - Transcriptional regulator of the arabinose operon in Shewanella, GntR family, at 690,286 to 691,005 _608 Pf6N2E2_609 - L-arabonate dehydratase (EC 4.2.1.25) (from data), at 691,355 to 693,091 _609 Pf6N2E2_610 - Nitrate/nitrite transporter, at 693,285 to 694,607 _610 Position (kb) 691 692 693 694Strain fitness (log2 ratio) -3 -2 -1 0 1at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.760 kb on - strand, within Pf6N2E2_608at 690.760 kb on - strand, within Pf6N2E2_608at 690.809 kb on + strand, within Pf6N2E2_608at 690.809 kb on + strand, within Pf6N2E2_608at 690.810 kb on - strand, within Pf6N2E2_608at 690.872 kb on + strand, within Pf6N2E2_608at 690.873 kb on - strand, within Pf6N2E2_608at 690.873 kb on - strand, within Pf6N2E2_608at 690.907 kb on - strand, within Pf6N2E2_608at 690.998 kb on + strandat 691.047 kb on + strandat 691.048 kb on - strandat 691.119 kb on - strandat 691.197 kb on + strandat 691.198 kb on - strandat 691.290 kb on + strandat 691.291 kb on - strandat 691.291 kb on - strandat 691.374 kb on - strandat 691.446 kb on + strandat 691.446 kb on + strandat 691.446 kb on + strandat 691.446 kb on + strandat 691.447 kb on - strandat 691.685 kb on - strand, within Pf6N2E2_609at 691.833 kb on + strand, within Pf6N2E2_609at 691.834 kb on - strand, within Pf6N2E2_609at 691.834 kb on - strand, within Pf6N2E2_609at 691.951 kb on + strand, within Pf6N2E2_609at 691.951 kb on + strand, within Pf6N2E2_609at 692.007 kb on + strand, within Pf6N2E2_609at 692.008 kb on - strand, within Pf6N2E2_609at 692.127 kb on + strand, within Pf6N2E2_609at 692.127 kb on + strand, within Pf6N2E2_609at 692.127 kb on + strand, within Pf6N2E2_609at 692.127 kb on + strand, within Pf6N2E2_609at 692.128 kb on - strand, within Pf6N2E2_609at 692.128 kb on - strand, within Pf6N2E2_609at 692.130 kb on + strand, within Pf6N2E2_609at 692.130 kb on + strand, within Pf6N2E2_609at 692.131 kb on - strand, within Pf6N2E2_609at 692.131 kb on - strand, within Pf6N2E2_609at 692.131 kb on - strand, within Pf6N2E2_609at 692.131 kb on - strand, within Pf6N2E2_609at 692.386 kb on + strand, within Pf6N2E2_609at 692.386 kb on + strand, within Pf6N2E2_609at 692.387 kb on - strand, within Pf6N2E2_609at 692.400 kb on + strand, within Pf6N2E2_609at 693.306 kb on - strandat 693.317 kb on + strandat 693.468 kb on + strand, within Pf6N2E2_610at 693.468 kb on + strand, within Pf6N2E2_610at 693.468 kb on + strand, within Pf6N2E2_610at 693.468 kb on + strand, within Pf6N2E2_610at 693.469 kb on - strand, within Pf6N2E2_610at 693.580 kb on + strand, within Pf6N2E2_610at 693.581 kb on - strand, within Pf6N2E2_610at 693.593 kb on + strand, within Pf6N2E2_610at 693.600 kb on + strand, within Pf6N2E2_610at 693.600 kb on + strand, within Pf6N2E2_610at 693.601 kb on - strand, within Pf6N2E2_610at 693.601 kb on - strand, within Pf6N2E2_610at 693.601 kb on - strand, within Pf6N2E2_610at 693.601 kb on - strand, within Pf6N2E2_610at 693.657 kb on + strand, within Pf6N2E2_610at 693.657 kb on + strand, within Pf6N2E2_610at 693.657 kb on + strand, within Pf6N2E2_610at 693.658 kb on - strand, within Pf6N2E2_610at 693.660 kb on + strand, within Pf6N2E2_610at 693.660 kb on + strand, within Pf6N2E2_610at 693.660 kb on + strand, within Pf6N2E2_610at 693.660 kb on + strand, within Pf6N2E2_610at 693.660 kb on + strand, within Pf6N2E2_610at 693.661 kb on - strand, within Pf6N2E2_610at 693.728 kb on + strand, within Pf6N2E2_610at 693.728 kb on + strand, within Pf6N2E2_610at 693.728 kb on + strand, within Pf6N2E2_610at 693.729 kb on - strand, within Pf6N2E2_610at 693.729 kb on - strand, within Pf6N2E2_610at 693.865 kb on - strand, within Pf6N2E2_610at 694.027 kb on - strand, within Pf6N2E2_610

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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690,759 + Pf6N2E2_608 0.66 -1.2
690,759 + Pf6N2E2_608 0.66 -0.4
690,759 + Pf6N2E2_608 0.66 -0.9
690,759 + Pf6N2E2_608 0.66 +0.5
690,759 + Pf6N2E2_608 0.66 -0.8
690,759 + Pf6N2E2_608 0.66 +1.0
690,760 - Pf6N2E2_608 0.66 -0.7
690,760 - Pf6N2E2_608 0.66 +1.4
690,809 + Pf6N2E2_608 0.73 -0.1
690,809 + Pf6N2E2_608 0.73 -0.8
690,810 - Pf6N2E2_608 0.73 -1.2
690,872 + Pf6N2E2_608 0.81 -0.2
690,873 - Pf6N2E2_608 0.82 -0.1
690,873 - Pf6N2E2_608 0.82 -0.0
690,907 - Pf6N2E2_608 0.86 -1.3
690,998 + +0.9
691,047 + +0.3
691,048 - +0.1
691,119 - -1.4
691,197 + +0.1
691,198 - -2.4
691,290 + -1.0
691,291 - +0.4
691,291 - -0.9
691,374 - -0.7
691,446 + -0.7
691,446 + +0.0
691,446 + +0.1
691,446 + +0.4
691,447 - +1.5
691,685 - Pf6N2E2_609 0.19 -1.7
691,833 + Pf6N2E2_609 0.28 -1.5
691,834 - Pf6N2E2_609 0.28 +1.7
691,834 - Pf6N2E2_609 0.28 +0.4
691,951 + Pf6N2E2_609 0.34 -0.2
691,951 + Pf6N2E2_609 0.34 +0.1
692,007 + Pf6N2E2_609 0.38 -0.4
692,008 - Pf6N2E2_609 0.38 +0.2
692,127 + Pf6N2E2_609 0.44 +0.4
692,127 + Pf6N2E2_609 0.44 -0.3
692,127 + Pf6N2E2_609 0.44 +0.9
692,127 + Pf6N2E2_609 0.44 +0.2
692,128 - Pf6N2E2_609 0.45 -0.4
692,128 - Pf6N2E2_609 0.45 -0.4
692,130 + Pf6N2E2_609 0.45 +1.3
692,130 + Pf6N2E2_609 0.45 -1.7
692,131 - Pf6N2E2_609 0.45 -0.3
692,131 - Pf6N2E2_609 0.45 -0.3
692,131 - Pf6N2E2_609 0.45 -0.6
692,131 - Pf6N2E2_609 0.45 -0.2
692,386 + Pf6N2E2_609 0.59 -0.2
692,386 + Pf6N2E2_609 0.59 -0.8
692,387 - Pf6N2E2_609 0.59 -3.1
692,400 + Pf6N2E2_609 0.60 -0.2
693,306 - -0.6
693,317 + +0.8
693,468 + Pf6N2E2_610 0.14 -1.0
693,468 + Pf6N2E2_610 0.14 -0.8
693,468 + Pf6N2E2_610 0.14 +0.9
693,468 + Pf6N2E2_610 0.14 +0.9
693,469 - Pf6N2E2_610 0.14 +0.5
693,580 + Pf6N2E2_610 0.22 +0.2
693,581 - Pf6N2E2_610 0.22 +1.4
693,593 + Pf6N2E2_610 0.23 -0.5
693,600 + Pf6N2E2_610 0.24 +0.6
693,600 + Pf6N2E2_610 0.24 +0.0
693,601 - Pf6N2E2_610 0.24 +0.5
693,601 - Pf6N2E2_610 0.24 -1.0
693,601 - Pf6N2E2_610 0.24 +0.6
693,601 - Pf6N2E2_610 0.24 +1.5
693,657 + Pf6N2E2_610 0.28 +1.0
693,657 + Pf6N2E2_610 0.28 -0.7
693,657 + Pf6N2E2_610 0.28 -2.3
693,658 - Pf6N2E2_610 0.28 +0.3
693,660 + Pf6N2E2_610 0.28 -0.8
693,660 + Pf6N2E2_610 0.28 +0.9
693,660 + Pf6N2E2_610 0.28 -2.2
693,660 + Pf6N2E2_610 0.28 +1.1
693,660 + Pf6N2E2_610 0.28 -2.7
693,661 - Pf6N2E2_610 0.28 +0.3
693,728 + Pf6N2E2_610 0.33 -0.0
693,728 + Pf6N2E2_610 0.33 +0.5
693,728 + Pf6N2E2_610 0.33 +0.7
693,729 - Pf6N2E2_610 0.34 -1.8
693,729 - Pf6N2E2_610 0.34 +1.0
693,865 - Pf6N2E2_610 0.44 -0.5
694,027 - Pf6N2E2_610 0.56 +0.5

Or see this region's nucleotide sequence