Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5986

Experiment: Phosphomycin 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5984 and Pf6N2E2_5985 are separated by 75 nucleotidesPf6N2E2_5985 and Pf6N2E2_5986 are separated by 9 nucleotidesPf6N2E2_5986 and Pf6N2E2_5987 overlap by 4 nucleotidesPf6N2E2_5987 and Pf6N2E2_5988 are separated by 8 nucleotides Pf6N2E2_5984 - Electron transfer flavoprotein, alpha subunit, at 6,803,239 to 6,804,168 _5984 Pf6N2E2_5985 - Extracellular solute-binding protein, family 3, at 6,804,244 to 6,805,068 _5985 Pf6N2E2_5986 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 6,805,078 to 6,805,437 _5986 Pf6N2E2_5987 - OmpA family protein, at 6,805,434 to 6,806,243 _5987 Pf6N2E2_5988 - hypothetical protein, at 6,806,252 to 6,806,467 _5988 Position (kb) 6805 6806Strain fitness (log2 ratio) -2 -1 0 1 2at 6804.166 kb on + strandat 6804.166 kb on + strandat 6804.167 kb on - strandat 6804.184 kb on + strandat 6804.184 kb on + strandat 6804.184 kb on + strandat 6804.184 kb on + strandat 6804.184 kb on + strandat 6804.184 kb on + strandat 6804.185 kb on - strandat 6804.185 kb on - strandat 6804.186 kb on + strandat 6804.186 kb on + strandat 6804.186 kb on + strandat 6804.187 kb on - strandat 6804.187 kb on - strandat 6804.187 kb on - strandat 6804.187 kb on - strandat 6804.187 kb on - strandat 6804.187 kb on - strandat 6804.216 kb on + strandat 6804.217 kb on - strandat 6804.237 kb on + strandat 6804.237 kb on + strandat 6804.237 kb on + strandat 6804.238 kb on - strandat 6804.238 kb on - strandat 6804.238 kb on - strandat 6804.238 kb on - strandat 6804.469 kb on + strand, within Pf6N2E2_5985at 6804.571 kb on + strand, within Pf6N2E2_5985at 6804.571 kb on + strand, within Pf6N2E2_5985at 6804.571 kb on + strand, within Pf6N2E2_5985at 6804.571 kb on + strand, within Pf6N2E2_5985at 6804.572 kb on - strand, within Pf6N2E2_5985at 6804.601 kb on + strand, within Pf6N2E2_5985at 6804.693 kb on + strand, within Pf6N2E2_5985at 6804.694 kb on - strand, within Pf6N2E2_5985at 6804.796 kb on + strand, within Pf6N2E2_5985at 6804.796 kb on + strand, within Pf6N2E2_5985at 6804.796 kb on + strand, within Pf6N2E2_5985at 6804.796 kb on + strand, within Pf6N2E2_5985at 6804.796 kb on + strand, within Pf6N2E2_5985at 6804.796 kb on + strand, within Pf6N2E2_5985at 6804.796 kb on + strand, within Pf6N2E2_5985at 6804.796 kb on + strand, within Pf6N2E2_5985at 6804.796 kb on + strand, within Pf6N2E2_5985at 6804.797 kb on - strand, within Pf6N2E2_5985at 6804.797 kb on - strand, within Pf6N2E2_5985at 6804.797 kb on - strand, within Pf6N2E2_5985at 6804.797 kb on - strand, within Pf6N2E2_5985at 6804.797 kb on - strand, within Pf6N2E2_5985at 6804.915 kb on + strand, within Pf6N2E2_5985at 6805.076 kb on + strandat 6805.076 kb on + strandat 6805.077 kb on - strandat 6805.083 kb on + strandat 6805.084 kb on - strandat 6805.285 kb on + strand, within Pf6N2E2_5986at 6805.285 kb on + strand, within Pf6N2E2_5986at 6805.285 kb on + strand, within Pf6N2E2_5986at 6805.450 kb on + strandat 6805.450 kb on + strandat 6805.450 kb on + strandat 6805.451 kb on - strandat 6805.466 kb on - strandat 6805.488 kb on + strandat 6805.488 kb on + strandat 6805.488 kb on + strandat 6805.488 kb on + strandat 6805.488 kb on + strandat 6805.489 kb on - strandat 6805.641 kb on + strand, within Pf6N2E2_5987at 6805.671 kb on + strand, within Pf6N2E2_5987at 6805.678 kb on - strand, within Pf6N2E2_5987at 6805.692 kb on + strand, within Pf6N2E2_5987at 6805.693 kb on - strand, within Pf6N2E2_5987at 6805.972 kb on + strand, within Pf6N2E2_5987at 6805.972 kb on + strand, within Pf6N2E2_5987at 6805.972 kb on + strand, within Pf6N2E2_5987at 6806.010 kb on + strand, within Pf6N2E2_5987at 6806.010 kb on + strand, within Pf6N2E2_5987at 6806.010 kb on + strand, within Pf6N2E2_5987at 6806.011 kb on - strand, within Pf6N2E2_5987at 6806.011 kb on - strand, within Pf6N2E2_5987at 6806.130 kb on + strand, within Pf6N2E2_5987at 6806.275 kb on - strand, within Pf6N2E2_5988at 6806.320 kb on + strand, within Pf6N2E2_5988at 6806.320 kb on + strand, within Pf6N2E2_5988at 6806.326 kb on + strand, within Pf6N2E2_5988at 6806.327 kb on - strand, within Pf6N2E2_5988at 6806.327 kb on - strand, within Pf6N2E2_5988at 6806.327 kb on - strand, within Pf6N2E2_5988at 6806.346 kb on - strand, within Pf6N2E2_5988at 6806.415 kb on - strand, within Pf6N2E2_5988

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
remove
6,804,166 + -1.9
6,804,166 + +1.1
6,804,167 - +1.3
6,804,184 + +0.2
6,804,184 + +1.4
6,804,184 + +0.6
6,804,184 + +0.2
6,804,184 + -1.1
6,804,184 + -0.7
6,804,185 - +2.1
6,804,185 - -0.3
6,804,186 + +1.0
6,804,186 + -0.4
6,804,186 + +0.7
6,804,187 - +0.0
6,804,187 - +2.0
6,804,187 - +1.3
6,804,187 - +1.5
6,804,187 - -0.3
6,804,187 - -0.5
6,804,216 + -2.3
6,804,217 - -0.3
6,804,237 + +0.2
6,804,237 + +0.7
6,804,237 + -0.9
6,804,238 - +0.7
6,804,238 - -2.6
6,804,238 - -0.4
6,804,238 - +0.2
6,804,469 + Pf6N2E2_5985 0.27 +0.7
6,804,571 + Pf6N2E2_5985 0.40 +0.8
6,804,571 + Pf6N2E2_5985 0.40 -1.6
6,804,571 + Pf6N2E2_5985 0.40 -0.5
6,804,571 + Pf6N2E2_5985 0.40 +0.3
6,804,572 - Pf6N2E2_5985 0.40 +0.5
6,804,601 + Pf6N2E2_5985 0.43 +1.1
6,804,693 + Pf6N2E2_5985 0.54 -0.3
6,804,694 - Pf6N2E2_5985 0.55 +0.2
6,804,796 + Pf6N2E2_5985 0.67 +0.6
6,804,796 + Pf6N2E2_5985 0.67 +0.1
6,804,796 + Pf6N2E2_5985 0.67 +0.2
6,804,796 + Pf6N2E2_5985 0.67 -0.2
6,804,796 + Pf6N2E2_5985 0.67 +0.5
6,804,796 + Pf6N2E2_5985 0.67 -0.1
6,804,796 + Pf6N2E2_5985 0.67 -1.7
6,804,796 + Pf6N2E2_5985 0.67 +0.5
6,804,796 + Pf6N2E2_5985 0.67 +0.3
6,804,797 - Pf6N2E2_5985 0.67 -1.1
6,804,797 - Pf6N2E2_5985 0.67 -1.1
6,804,797 - Pf6N2E2_5985 0.67 +0.5
6,804,797 - Pf6N2E2_5985 0.67 -0.5
6,804,797 - Pf6N2E2_5985 0.67 -1.4
6,804,915 + Pf6N2E2_5985 0.81 +0.3
6,805,076 + +0.3
6,805,076 + +0.2
6,805,077 - +0.1
6,805,083 + +2.3
6,805,084 - +1.1
6,805,285 + Pf6N2E2_5986 0.57 -1.1
6,805,285 + Pf6N2E2_5986 0.57 +0.8
6,805,285 + Pf6N2E2_5986 0.57 -0.7
6,805,450 + +1.0
6,805,450 + +1.5
6,805,450 + +0.8
6,805,451 - +1.4
6,805,466 - +1.3
6,805,488 + -0.6
6,805,488 + +0.8
6,805,488 + +0.3
6,805,488 + +0.5
6,805,488 + +1.0
6,805,489 - +0.5
6,805,641 + Pf6N2E2_5987 0.26 +1.1
6,805,671 + Pf6N2E2_5987 0.29 -0.6
6,805,678 - Pf6N2E2_5987 0.30 +1.0
6,805,692 + Pf6N2E2_5987 0.32 +0.3
6,805,693 - Pf6N2E2_5987 0.32 -1.3
6,805,972 + Pf6N2E2_5987 0.66 -0.7
6,805,972 + Pf6N2E2_5987 0.66 +1.2
6,805,972 + Pf6N2E2_5987 0.66 +0.8
6,806,010 + Pf6N2E2_5987 0.71 +0.7
6,806,010 + Pf6N2E2_5987 0.71 +0.7
6,806,010 + Pf6N2E2_5987 0.71 +0.1
6,806,011 - Pf6N2E2_5987 0.71 +0.9
6,806,011 - Pf6N2E2_5987 0.71 -0.1
6,806,130 + Pf6N2E2_5987 0.86 +1.7
6,806,275 - Pf6N2E2_5988 0.11 +0.4
6,806,320 + Pf6N2E2_5988 0.31 +0.2
6,806,320 + Pf6N2E2_5988 0.31 -1.8
6,806,326 + Pf6N2E2_5988 0.34 -0.2
6,806,327 - Pf6N2E2_5988 0.35 +0.5
6,806,327 - Pf6N2E2_5988 0.35 +0.9
6,806,327 - Pf6N2E2_5988 0.35 +0.1
6,806,346 - Pf6N2E2_5988 0.44 +0.8
6,806,415 - Pf6N2E2_5988 0.75 +0.0

Or see this region's nucleotide sequence