Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5937

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5935 and Pf6N2E2_5936 overlap by 1 nucleotidesPf6N2E2_5936 and Pf6N2E2_5937 overlap by 4 nucleotidesPf6N2E2_5937 and Pf6N2E2_5938 are separated by 267 nucleotidesPf6N2E2_5938 and Pf6N2E2_5939 overlap by 4 nucleotides Pf6N2E2_5935 - 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38), at 6,754,629 to 6,755,393 _5935 Pf6N2E2_5936 - Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48), at 6,755,393 to 6,755,857 _5936 Pf6N2E2_5937 - UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158), at 6,755,854 to 6,756,873 _5937 Pf6N2E2_5938 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 6,757,141 to 6,757,611 _5938 Pf6N2E2_5939 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 6,757,608 to 6,759,923 _5939 Position (kb) 6755 6756 6757Strain fitness (log2 ratio) -2 -1 0 1 2at 6755.422 kb on + strandat 6755.633 kb on + strand, within Pf6N2E2_5936at 6755.765 kb on + strand, within Pf6N2E2_5936at 6756.974 kb on + strandat 6756.975 kb on - strandat 6756.975 kb on - strandat 6757.040 kb on + strandat 6757.040 kb on + strandat 6757.040 kb on + strandat 6757.041 kb on - strandat 6757.041 kb on - strandat 6757.041 kb on - strandat 6757.041 kb on - strandat 6757.041 kb on - strandat 6757.041 kb on - strandat 6757.041 kb on - strandat 6757.114 kb on + strandat 6757.122 kb on + strandat 6757.123 kb on - strandat 6757.123 kb on - strandat 6757.123 kb on - strandat 6757.126 kb on + strandat 6757.126 kb on + strandat 6757.126 kb on + strandat 6757.126 kb on + strandat 6757.126 kb on + strandat 6757.126 kb on + strandat 6757.126 kb on + strandat 6757.127 kb on - strandat 6757.127 kb on - strandat 6757.435 kb on + strand, within Pf6N2E2_5938at 6757.549 kb on + strand, within Pf6N2E2_5938at 6757.549 kb on + strand, within Pf6N2E2_5938at 6757.549 kb on + strand, within Pf6N2E2_5938at 6757.549 kb on + strand, within Pf6N2E2_5938at 6757.549 kb on + strand, within Pf6N2E2_5938at 6757.549 kb on + strand, within Pf6N2E2_5938at 6757.549 kb on + strand, within Pf6N2E2_5938at 6757.550 kb on - strand, within Pf6N2E2_5938at 6757.550 kb on - strand, within Pf6N2E2_5938at 6757.550 kb on - strand, within Pf6N2E2_5938at 6757.552 kb on - strand, within Pf6N2E2_5938at 6757.792 kb on - strandat 6757.792 kb on - strandat 6757.792 kb on - strandat 6757.792 kb on - strandat 6757.862 kb on + strand, within Pf6N2E2_5939at 6757.862 kb on + strand, within Pf6N2E2_5939

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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6,755,422 + +0.7
6,755,633 + Pf6N2E2_5936 0.52 -0.8
6,755,765 + Pf6N2E2_5936 0.80 +0.7
6,756,974 + -1.3
6,756,975 - -0.3
6,756,975 - +0.5
6,757,040 + +0.1
6,757,040 + +2.0
6,757,040 + -0.1
6,757,041 - -1.5
6,757,041 - -0.6
6,757,041 - +1.0
6,757,041 - +1.0
6,757,041 - -0.9
6,757,041 - +0.5
6,757,041 - -0.4
6,757,114 + +1.2
6,757,122 + -1.8
6,757,123 - +0.3
6,757,123 - +1.0
6,757,123 - -0.4
6,757,126 + +1.1
6,757,126 + +1.4
6,757,126 + -0.7
6,757,126 + +0.3
6,757,126 + -1.1
6,757,126 + +0.8
6,757,126 + -0.7
6,757,127 - -0.8
6,757,127 - +0.1
6,757,435 + Pf6N2E2_5938 0.62 -1.5
6,757,549 + Pf6N2E2_5938 0.87 -0.5
6,757,549 + Pf6N2E2_5938 0.87 +0.1
6,757,549 + Pf6N2E2_5938 0.87 +1.2
6,757,549 + Pf6N2E2_5938 0.87 -0.8
6,757,549 + Pf6N2E2_5938 0.87 +0.1
6,757,549 + Pf6N2E2_5938 0.87 -0.6
6,757,549 + Pf6N2E2_5938 0.87 +0.2
6,757,550 - Pf6N2E2_5938 0.87 +0.8
6,757,550 - Pf6N2E2_5938 0.87 +0.5
6,757,550 - Pf6N2E2_5938 0.87 +0.1
6,757,552 - Pf6N2E2_5938 0.87 -1.3
6,757,792 - +0.6
6,757,792 - +0.2
6,757,792 - -0.6
6,757,792 - -0.3
6,757,862 + Pf6N2E2_5939 0.11 +0.9
6,757,862 + Pf6N2E2_5939 0.11 +0.9

Or see this region's nucleotide sequence