Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5935 and Pf6N2E2_5936 overlap by 1 nucleotides Pf6N2E2_5936 and Pf6N2E2_5937 overlap by 4 nucleotides Pf6N2E2_5937 and Pf6N2E2_5938 are separated by 267 nucleotides Pf6N2E2_5938 and Pf6N2E2_5939 overlap by 4 nucleotides
Pf6N2E2_5935 - 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38), at 6,754,629 to 6,755,393
_5935
Pf6N2E2_5936 - Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48), at 6,755,393 to 6,755,857
_5936
Pf6N2E2_5937 - UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158), at 6,755,854 to 6,756,873
_5937
Pf6N2E2_5938 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 6,757,141 to 6,757,611
_5938
Pf6N2E2_5939 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 6,757,608 to 6,759,923
_5939
Position (kb)
6755
6756
6757 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6755.422 kb on + strand at 6755.633 kb on + strand, within Pf6N2E2_5936 at 6755.765 kb on + strand, within Pf6N2E2_5936 at 6756.974 kb on + strand at 6756.975 kb on - strand at 6756.975 kb on - strand at 6757.040 kb on + strand at 6757.040 kb on + strand at 6757.040 kb on + strand at 6757.041 kb on - strand at 6757.041 kb on - strand at 6757.041 kb on - strand at 6757.041 kb on - strand at 6757.041 kb on - strand at 6757.041 kb on - strand at 6757.041 kb on - strand at 6757.114 kb on + strand at 6757.122 kb on + strand at 6757.123 kb on - strand at 6757.123 kb on - strand at 6757.123 kb on - strand at 6757.126 kb on + strand at 6757.126 kb on + strand at 6757.126 kb on + strand at 6757.126 kb on + strand at 6757.126 kb on + strand at 6757.126 kb on + strand at 6757.126 kb on + strand at 6757.127 kb on - strand at 6757.127 kb on - strand at 6757.435 kb on + strand, within Pf6N2E2_5938 at 6757.549 kb on + strand, within Pf6N2E2_5938 at 6757.549 kb on + strand, within Pf6N2E2_5938 at 6757.549 kb on + strand, within Pf6N2E2_5938 at 6757.549 kb on + strand, within Pf6N2E2_5938 at 6757.549 kb on + strand, within Pf6N2E2_5938 at 6757.549 kb on + strand, within Pf6N2E2_5938 at 6757.549 kb on + strand, within Pf6N2E2_5938 at 6757.550 kb on - strand, within Pf6N2E2_5938 at 6757.550 kb on - strand, within Pf6N2E2_5938 at 6757.550 kb on - strand, within Pf6N2E2_5938 at 6757.552 kb on - strand, within Pf6N2E2_5938 at 6757.792 kb on - strand at 6757.792 kb on - strand at 6757.792 kb on - strand at 6757.792 kb on - strand at 6757.862 kb on + strand, within Pf6N2E2_5939 at 6757.862 kb on + strand, within Pf6N2E2_5939
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 6,755,422 + +0.7 6,755,633 + Pf6N2E2_5936 0.52 -0.8 6,755,765 + Pf6N2E2_5936 0.80 +0.7 6,756,974 + -1.3 6,756,975 - -0.3 6,756,975 - +0.5 6,757,040 + +0.1 6,757,040 + +2.0 6,757,040 + -0.1 6,757,041 - -1.5 6,757,041 - -0.6 6,757,041 - +1.0 6,757,041 - +1.0 6,757,041 - -0.9 6,757,041 - +0.5 6,757,041 - -0.4 6,757,114 + +1.2 6,757,122 + -1.8 6,757,123 - +0.3 6,757,123 - +1.0 6,757,123 - -0.4 6,757,126 + +1.1 6,757,126 + +1.4 6,757,126 + -0.7 6,757,126 + +0.3 6,757,126 + -1.1 6,757,126 + +0.8 6,757,126 + -0.7 6,757,127 - -0.8 6,757,127 - +0.1 6,757,435 + Pf6N2E2_5938 0.62 -1.5 6,757,549 + Pf6N2E2_5938 0.87 -0.5 6,757,549 + Pf6N2E2_5938 0.87 +0.1 6,757,549 + Pf6N2E2_5938 0.87 +1.2 6,757,549 + Pf6N2E2_5938 0.87 -0.8 6,757,549 + Pf6N2E2_5938 0.87 +0.1 6,757,549 + Pf6N2E2_5938 0.87 -0.6 6,757,549 + Pf6N2E2_5938 0.87 +0.2 6,757,550 - Pf6N2E2_5938 0.87 +0.8 6,757,550 - Pf6N2E2_5938 0.87 +0.5 6,757,550 - Pf6N2E2_5938 0.87 +0.1 6,757,552 - Pf6N2E2_5938 0.87 -1.3 6,757,792 - +0.6 6,757,792 - +0.2 6,757,792 - -0.6 6,757,792 - -0.3 6,757,862 + Pf6N2E2_5939 0.11 +0.9 6,757,862 + Pf6N2E2_5939 0.11 +0.9
Or see this region's nucleotide sequence