Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5886 and Pf6N2E2_5887 are separated by 253 nucleotides Pf6N2E2_5887 and Pf6N2E2_5888 are separated by 56 nucleotides
Pf6N2E2_5886 - DNA-binding response regulator GltR, controls specific porins for the entry of glucose, at 6,705,110 to 6,705,868
_5886
Pf6N2E2_5887 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 6,706,122 to 6,706,856
_5887
Pf6N2E2_5888 - Putative NADP-dependent oxidoreductase PA1648, at 6,706,913 to 6,707,917
_5888
Position (kb)
6706
6707 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6705.138 kb on + strand at 6705.138 kb on + strand at 6705.138 kb on + strand at 6705.139 kb on - strand at 6705.139 kb on - strand at 6705.139 kb on - strand at 6705.212 kb on + strand, within Pf6N2E2_5886 at 6705.213 kb on - strand, within Pf6N2E2_5886 at 6705.213 kb on - strand, within Pf6N2E2_5886 at 6705.213 kb on - strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.513 kb on + strand, within Pf6N2E2_5886 at 6705.514 kb on - strand, within Pf6N2E2_5886 at 6705.514 kb on - strand, within Pf6N2E2_5886 at 6705.514 kb on - strand, within Pf6N2E2_5886 at 6705.514 kb on - strand, within Pf6N2E2_5886 at 6705.514 kb on - strand, within Pf6N2E2_5886 at 6705.747 kb on + strand, within Pf6N2E2_5886 at 6705.747 kb on + strand, within Pf6N2E2_5886 at 6705.747 kb on + strand, within Pf6N2E2_5886 at 6705.888 kb on + strand at 6705.889 kb on - strand at 6705.889 kb on - strand at 6705.933 kb on + strand at 6705.933 kb on + strand at 6705.933 kb on + strand at 6705.934 kb on - strand at 6706.008 kb on + strand at 6706.008 kb on + strand at 6706.009 kb on - strand at 6706.009 kb on - strand at 6706.009 kb on - strand at 6706.009 kb on - strand at 6706.009 kb on - strand at 6706.077 kb on + strand at 6706.078 kb on - strand at 6706.078 kb on - strand at 6706.078 kb on - strand at 6706.081 kb on + strand at 6706.081 kb on + strand at 6706.081 kb on + strand at 6706.925 kb on + strand at 6706.926 kb on - strand at 6707.130 kb on + strand, within Pf6N2E2_5888 at 6707.130 kb on + strand, within Pf6N2E2_5888 at 6707.130 kb on + strand, within Pf6N2E2_5888 at 6707.131 kb on - strand, within Pf6N2E2_5888 at 6707.131 kb on - strand, within Pf6N2E2_5888 at 6707.131 kb on - strand, within Pf6N2E2_5888 at 6707.131 kb on - strand, within Pf6N2E2_5888 at 6707.131 kb on - strand, within Pf6N2E2_5888 at 6707.131 kb on - strand, within Pf6N2E2_5888 at 6707.131 kb on - strand, within Pf6N2E2_5888 at 6707.131 kb on - strand, within Pf6N2E2_5888 at 6707.131 kb on - strand, within Pf6N2E2_5888 at 6707.166 kb on + strand, within Pf6N2E2_5888 at 6707.166 kb on + strand, within Pf6N2E2_5888 at 6707.166 kb on + strand, within Pf6N2E2_5888 at 6707.166 kb on + strand, within Pf6N2E2_5888 at 6707.167 kb on - strand, within Pf6N2E2_5888 at 6707.167 kb on - strand, within Pf6N2E2_5888 at 6707.259 kb on + strand, within Pf6N2E2_5888 at 6707.259 kb on + strand, within Pf6N2E2_5888 at 6707.260 kb on - strand, within Pf6N2E2_5888 at 6707.260 kb on - strand, within Pf6N2E2_5888 at 6707.260 kb on - strand, within Pf6N2E2_5888 at 6707.260 kb on - strand, within Pf6N2E2_5888 at 6707.319 kb on + strand, within Pf6N2E2_5888 at 6707.320 kb on - strand, within Pf6N2E2_5888 at 6707.369 kb on - strand, within Pf6N2E2_5888 at 6707.511 kb on + strand, within Pf6N2E2_5888 at 6707.511 kb on + strand, within Pf6N2E2_5888 at 6707.512 kb on - strand, within Pf6N2E2_5888 at 6707.547 kb on + strand, within Pf6N2E2_5888 at 6707.547 kb on + strand, within Pf6N2E2_5888 at 6707.584 kb on - strand, within Pf6N2E2_5888 at 6707.584 kb on - strand, within Pf6N2E2_5888 at 6707.610 kb on + strand, within Pf6N2E2_5888 at 6707.610 kb on + strand, within Pf6N2E2_5888 at 6707.611 kb on - strand, within Pf6N2E2_5888 at 6707.636 kb on + strand, within Pf6N2E2_5888 at 6707.636 kb on + strand, within Pf6N2E2_5888 at 6707.636 kb on + strand, within Pf6N2E2_5888 at 6707.636 kb on + strand, within Pf6N2E2_5888 at 6707.636 kb on + strand, within Pf6N2E2_5888 at 6707.637 kb on - strand, within Pf6N2E2_5888 at 6707.637 kb on - strand, within Pf6N2E2_5888 at 6707.640 kb on + strand, within Pf6N2E2_5888 at 6707.640 kb on + strand, within Pf6N2E2_5888 at 6707.678 kb on + strand, within Pf6N2E2_5888 at 6707.678 kb on + strand, within Pf6N2E2_5888 at 6707.678 kb on + strand, within Pf6N2E2_5888 at 6707.679 kb on - strand, within Pf6N2E2_5888 at 6707.679 kb on - strand, within Pf6N2E2_5888 at 6707.679 kb on - strand, within Pf6N2E2_5888 at 6707.733 kb on + strand, within Pf6N2E2_5888 at 6707.733 kb on + strand, within Pf6N2E2_5888 at 6707.733 kb on + strand, within Pf6N2E2_5888 at 6707.733 kb on + strand, within Pf6N2E2_5888 at 6707.733 kb on + strand, within Pf6N2E2_5888 at 6707.733 kb on + strand, within Pf6N2E2_5888 at 6707.733 kb on + strand, within Pf6N2E2_5888 at 6707.733 kb on + strand, within Pf6N2E2_5888 at 6707.733 kb on + strand, within Pf6N2E2_5888 at 6707.734 kb on - strand, within Pf6N2E2_5888 at 6707.734 kb on - strand, within Pf6N2E2_5888 at 6707.734 kb on - strand, within Pf6N2E2_5888 at 6707.734 kb on - strand, within Pf6N2E2_5888 at 6707.734 kb on - strand, within Pf6N2E2_5888 at 6707.734 kb on - strand, within Pf6N2E2_5888 at 6707.734 kb on - strand, within Pf6N2E2_5888 at 6707.734 kb on - strand, within Pf6N2E2_5888 at 6707.734 kb on - strand, within Pf6N2E2_5888 at 6707.734 kb on - strand, within Pf6N2E2_5888 at 6707.784 kb on + strand, within Pf6N2E2_5888 at 6707.785 kb on - strand, within Pf6N2E2_5888 at 6707.785 kb on - strand, within Pf6N2E2_5888 at 6707.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 6,705,138 + -0.2 6,705,138 + +0.3 6,705,138 + -0.9 6,705,139 - -0.9 6,705,139 - -0.2 6,705,139 - -2.9 6,705,212 + Pf6N2E2_5886 0.13 -1.1 6,705,213 - Pf6N2E2_5886 0.14 -2.1 6,705,213 - Pf6N2E2_5886 0.14 -0.3 6,705,213 - Pf6N2E2_5886 0.14 +0.2 6,705,513 + Pf6N2E2_5886 0.53 -0.3 6,705,513 + Pf6N2E2_5886 0.53 +1.6 6,705,513 + Pf6N2E2_5886 0.53 -0.3 6,705,513 + Pf6N2E2_5886 0.53 +0.8 6,705,513 + Pf6N2E2_5886 0.53 +1.0 6,705,513 + Pf6N2E2_5886 0.53 +1.2 6,705,514 - Pf6N2E2_5886 0.53 +0.4 6,705,514 - Pf6N2E2_5886 0.53 -0.0 6,705,514 - Pf6N2E2_5886 0.53 +0.7 6,705,514 - Pf6N2E2_5886 0.53 -0.3 6,705,514 - Pf6N2E2_5886 0.53 +0.1 6,705,747 + Pf6N2E2_5886 0.84 +0.7 6,705,747 + Pf6N2E2_5886 0.84 +1.4 6,705,747 + Pf6N2E2_5886 0.84 +0.3 6,705,888 + -0.8 6,705,889 - +0.7 6,705,889 - +0.1 6,705,933 + -1.5 6,705,933 + +0.0 6,705,933 + -1.1 6,705,934 - -1.7 6,706,008 + +0.1 6,706,008 + -0.7 6,706,009 - -1.3 6,706,009 - -0.6 6,706,009 - -0.4 6,706,009 - -0.4 6,706,009 - -1.8 6,706,077 + -1.1 6,706,078 - -1.7 6,706,078 - -0.4 6,706,078 - -0.5 6,706,081 + -0.3 6,706,081 + -1.5 6,706,081 + +0.3 6,706,925 + +1.3 6,706,926 - +0.1 6,707,130 + Pf6N2E2_5888 0.22 -0.3 6,707,130 + Pf6N2E2_5888 0.22 -0.7 6,707,130 + Pf6N2E2_5888 0.22 -0.6 6,707,131 - Pf6N2E2_5888 0.22 +2.0 6,707,131 - Pf6N2E2_5888 0.22 -0.1 6,707,131 - Pf6N2E2_5888 0.22 -0.6 6,707,131 - Pf6N2E2_5888 0.22 -0.8 6,707,131 - Pf6N2E2_5888 0.22 -0.4 6,707,131 - Pf6N2E2_5888 0.22 +1.1 6,707,131 - Pf6N2E2_5888 0.22 -0.6 6,707,131 - Pf6N2E2_5888 0.22 -1.2 6,707,131 - Pf6N2E2_5888 0.22 -0.6 6,707,166 + Pf6N2E2_5888 0.25 +0.3 6,707,166 + Pf6N2E2_5888 0.25 +1.4 6,707,166 + Pf6N2E2_5888 0.25 +0.2 6,707,166 + Pf6N2E2_5888 0.25 -0.2 6,707,167 - Pf6N2E2_5888 0.25 +0.4 6,707,167 - Pf6N2E2_5888 0.25 -0.3 6,707,259 + Pf6N2E2_5888 0.34 +0.6 6,707,259 + Pf6N2E2_5888 0.34 -0.2 6,707,260 - Pf6N2E2_5888 0.35 -0.1 6,707,260 - Pf6N2E2_5888 0.35 +0.8 6,707,260 - Pf6N2E2_5888 0.35 -0.6 6,707,260 - Pf6N2E2_5888 0.35 +0.6 6,707,319 + Pf6N2E2_5888 0.40 +1.1 6,707,320 - Pf6N2E2_5888 0.40 +2.1 6,707,369 - Pf6N2E2_5888 0.45 -3.0 6,707,511 + Pf6N2E2_5888 0.60 +1.4 6,707,511 + Pf6N2E2_5888 0.60 +0.9 6,707,512 - Pf6N2E2_5888 0.60 -0.3 6,707,547 + Pf6N2E2_5888 0.63 +0.9 6,707,547 + Pf6N2E2_5888 0.63 +0.2 6,707,584 - Pf6N2E2_5888 0.67 +0.2 6,707,584 - Pf6N2E2_5888 0.67 -0.8 6,707,610 + Pf6N2E2_5888 0.69 -0.1 6,707,610 + Pf6N2E2_5888 0.69 +0.5 6,707,611 - Pf6N2E2_5888 0.69 +1.3 6,707,636 + Pf6N2E2_5888 0.72 -0.1 6,707,636 + Pf6N2E2_5888 0.72 +0.6 6,707,636 + Pf6N2E2_5888 0.72 -0.9 6,707,636 + Pf6N2E2_5888 0.72 +1.0 6,707,636 + Pf6N2E2_5888 0.72 -1.0 6,707,637 - Pf6N2E2_5888 0.72 -0.1 6,707,637 - Pf6N2E2_5888 0.72 -0.6 6,707,640 + Pf6N2E2_5888 0.72 +0.3 6,707,640 + Pf6N2E2_5888 0.72 -0.3 6,707,678 + Pf6N2E2_5888 0.76 +0.4 6,707,678 + Pf6N2E2_5888 0.76 -0.4 6,707,678 + Pf6N2E2_5888 0.76 -0.3 6,707,679 - Pf6N2E2_5888 0.76 -0.2 6,707,679 - Pf6N2E2_5888 0.76 +0.0 6,707,679 - Pf6N2E2_5888 0.76 +1.2 6,707,733 + Pf6N2E2_5888 0.82 +0.7 6,707,733 + Pf6N2E2_5888 0.82 -0.5 6,707,733 + Pf6N2E2_5888 0.82 +0.0 6,707,733 + Pf6N2E2_5888 0.82 +0.1 6,707,733 + Pf6N2E2_5888 0.82 +0.4 6,707,733 + Pf6N2E2_5888 0.82 +0.0 6,707,733 + Pf6N2E2_5888 0.82 -0.4 6,707,733 + Pf6N2E2_5888 0.82 +0.0 6,707,733 + Pf6N2E2_5888 0.82 -0.8 6,707,734 - Pf6N2E2_5888 0.82 -0.7 6,707,734 - Pf6N2E2_5888 0.82 +0.1 6,707,734 - Pf6N2E2_5888 0.82 -0.6 6,707,734 - Pf6N2E2_5888 0.82 -0.3 6,707,734 - Pf6N2E2_5888 0.82 +0.3 6,707,734 - Pf6N2E2_5888 0.82 +0.0 6,707,734 - Pf6N2E2_5888 0.82 +0.4 6,707,734 - Pf6N2E2_5888 0.82 +0.9 6,707,734 - Pf6N2E2_5888 0.82 -0.2 6,707,734 - Pf6N2E2_5888 0.82 -1.6 6,707,784 + Pf6N2E2_5888 0.87 +1.0 6,707,785 - Pf6N2E2_5888 0.87 -1.3 6,707,785 - Pf6N2E2_5888 0.87 -0.9 6,707,842 - +0.5
Or see this region's nucleotide sequence