Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5683

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5682 and Pf6N2E2_5683 are separated by 164 nucleotidesPf6N2E2_5683 and Pf6N2E2_6161 are separated by 598 nucleotides Pf6N2E2_5682 - Transcriptional regulator, AraC family, at 6,495,268 to 6,496,080 _5682 Pf6N2E2_5683 - Alginate biosynthesis transcriptional activator, at 6,496,245 to 6,496,499 _5683 Pf6N2E2_6161 - tRNA-Arg-CCT, at 6,497,098 to 6,497,171 _6161 Position (kb) 6496 6497Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6495.290 kb on + strandat 6495.290 kb on + strandat 6495.290 kb on + strandat 6495.290 kb on + strandat 6495.290 kb on + strandat 6495.290 kb on + strandat 6495.290 kb on + strandat 6495.290 kb on + strandat 6495.291 kb on - strandat 6495.291 kb on - strandat 6495.291 kb on - strandat 6495.291 kb on - strandat 6495.291 kb on - strandat 6495.336 kb on + strandat 6495.337 kb on - strandat 6495.337 kb on - strandat 6495.438 kb on - strand, within Pf6N2E2_5682at 6495.438 kb on - strand, within Pf6N2E2_5682at 6495.438 kb on - strand, within Pf6N2E2_5682at 6495.698 kb on + strand, within Pf6N2E2_5682at 6495.698 kb on + strand, within Pf6N2E2_5682at 6495.698 kb on + strand, within Pf6N2E2_5682at 6495.699 kb on - strand, within Pf6N2E2_5682at 6495.787 kb on - strand, within Pf6N2E2_5682at 6495.824 kb on + strand, within Pf6N2E2_5682at 6495.824 kb on + strand, within Pf6N2E2_5682at 6495.825 kb on - strand, within Pf6N2E2_5682at 6495.896 kb on - strand, within Pf6N2E2_5682at 6495.896 kb on - strand, within Pf6N2E2_5682at 6495.897 kb on + strand, within Pf6N2E2_5682at 6495.897 kb on + strand, within Pf6N2E2_5682at 6495.897 kb on + strand, within Pf6N2E2_5682at 6495.897 kb on + strand, within Pf6N2E2_5682at 6495.897 kb on + strand, within Pf6N2E2_5682at 6495.897 kb on + strand, within Pf6N2E2_5682at 6495.897 kb on + strand, within Pf6N2E2_5682at 6495.897 kb on + strand, within Pf6N2E2_5682at 6495.897 kb on + strand, within Pf6N2E2_5682at 6495.898 kb on - strand, within Pf6N2E2_5682at 6495.898 kb on - strand, within Pf6N2E2_5682at 6495.898 kb on - strand, within Pf6N2E2_5682at 6495.898 kb on - strand, within Pf6N2E2_5682at 6495.898 kb on - strand, within Pf6N2E2_5682at 6495.898 kb on - strand, within Pf6N2E2_5682at 6495.898 kb on - strand, within Pf6N2E2_5682at 6495.898 kb on - strand, within Pf6N2E2_5682at 6495.898 kb on - strand, within Pf6N2E2_5682at 6495.898 kb on - strand, within Pf6N2E2_5682at 6495.919 kb on + strand, within Pf6N2E2_5682at 6495.919 kb on + strand, within Pf6N2E2_5682at 6495.920 kb on - strand, within Pf6N2E2_5682at 6495.920 kb on - strand, within Pf6N2E2_5682at 6495.990 kb on + strand, within Pf6N2E2_5682at 6495.990 kb on + strand, within Pf6N2E2_5682at 6495.991 kb on - strand, within Pf6N2E2_5682at 6495.991 kb on - strand, within Pf6N2E2_5682at 6496.118 kb on + strandat 6496.119 kb on - strandat 6496.163 kb on + strandat 6496.164 kb on - strandat 6496.232 kb on + strandat 6496.416 kb on - strand, within Pf6N2E2_5683at 6496.516 kb on - strandat 6496.571 kb on + strandat 6496.571 kb on + strandat 6496.571 kb on + strandat 6496.571 kb on + strandat 6496.572 kb on - strandat 6496.572 kb on - strandat 6496.572 kb on - strandat 6496.572 kb on - strandat 6496.572 kb on - strandat 6496.572 kb on - strandat 6496.572 kb on - strandat 6496.572 kb on - strandat 6496.573 kb on + strandat 6496.574 kb on - strandat 6496.574 kb on - strandat 6496.574 kb on - strandat 6496.574 kb on - strandat 6496.574 kb on - strandat 6496.574 kb on - strandat 6496.574 kb on - strandat 6496.574 kb on - strandat 6496.574 kb on - strandat 6496.574 kb on - strandat 6496.577 kb on + strandat 6496.628 kb on + strandat 6496.629 kb on - strandat 6496.828 kb on + strandat 6496.828 kb on + strandat 6496.828 kb on + strandat 6496.828 kb on + strandat 6496.828 kb on + strandat 6496.829 kb on - strandat 6496.891 kb on - strandat 6496.917 kb on - strandat 6496.919 kb on + strandat 6496.983 kb on + strandat 6496.983 kb on + strandat 6496.984 kb on - strandat 6496.993 kb on + strandat 6496.993 kb on + strandat 6496.993 kb on + strandat 6496.993 kb on + strandat 6496.994 kb on - strandat 6496.994 kb on - strandat 6496.994 kb on - strandat 6496.994 kb on - strandat 6496.996 kb on + strandat 6496.996 kb on + strandat 6496.996 kb on + strandat 6496.996 kb on + strandat 6496.996 kb on + strandat 6496.996 kb on + strandat 6496.996 kb on + strandat 6496.997 kb on - strandat 6496.997 kb on - strandat 6497.005 kb on - strandat 6497.005 kb on - strandat 6497.005 kb on - strandat 6497.011 kb on - strandat 6497.011 kb on - strandat 6497.175 kb on + strandat 6497.178 kb on + strandat 6497.179 kb on - strandat 6497.238 kb on + strandat 6497.238 kb on + strandat 6497.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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6,495,290 + -0.5
6,495,290 + -0.2
6,495,290 + +1.7
6,495,290 + +1.1
6,495,290 + +0.6
6,495,290 + +0.3
6,495,290 + -0.1
6,495,290 + -0.4
6,495,291 - +1.5
6,495,291 - +1.0
6,495,291 - -0.6
6,495,291 - +1.2
6,495,291 - -0.5
6,495,336 + -0.2
6,495,337 - -1.8
6,495,337 - +0.4
6,495,438 - Pf6N2E2_5682 0.21 -0.0
6,495,438 - Pf6N2E2_5682 0.21 +1.4
6,495,438 - Pf6N2E2_5682 0.21 +0.5
6,495,698 + Pf6N2E2_5682 0.53 +1.9
6,495,698 + Pf6N2E2_5682 0.53 -0.3
6,495,698 + Pf6N2E2_5682 0.53 +0.8
6,495,699 - Pf6N2E2_5682 0.53 +0.5
6,495,787 - Pf6N2E2_5682 0.64 -0.1
6,495,824 + Pf6N2E2_5682 0.68 +1.2
6,495,824 + Pf6N2E2_5682 0.68 +0.8
6,495,825 - Pf6N2E2_5682 0.69 +0.9
6,495,896 - Pf6N2E2_5682 0.77 -0.5
6,495,896 - Pf6N2E2_5682 0.77 -0.6
6,495,897 + Pf6N2E2_5682 0.77 -1.6
6,495,897 + Pf6N2E2_5682 0.77 -1.2
6,495,897 + Pf6N2E2_5682 0.77 +0.0
6,495,897 + Pf6N2E2_5682 0.77 -0.4
6,495,897 + Pf6N2E2_5682 0.77 -0.4
6,495,897 + Pf6N2E2_5682 0.77 -0.3
6,495,897 + Pf6N2E2_5682 0.77 +0.4
6,495,897 + Pf6N2E2_5682 0.77 -1.6
6,495,897 + Pf6N2E2_5682 0.77 -0.7
6,495,898 - Pf6N2E2_5682 0.77 +0.1
6,495,898 - Pf6N2E2_5682 0.77 +0.7
6,495,898 - Pf6N2E2_5682 0.77 -0.1
6,495,898 - Pf6N2E2_5682 0.77 -1.8
6,495,898 - Pf6N2E2_5682 0.77 -0.9
6,495,898 - Pf6N2E2_5682 0.77 +1.1
6,495,898 - Pf6N2E2_5682 0.77 +0.3
6,495,898 - Pf6N2E2_5682 0.77 +0.4
6,495,898 - Pf6N2E2_5682 0.77 +0.3
6,495,898 - Pf6N2E2_5682 0.77 +0.5
6,495,919 + Pf6N2E2_5682 0.80 -0.3
6,495,919 + Pf6N2E2_5682 0.80 +0.3
6,495,920 - Pf6N2E2_5682 0.80 -0.2
6,495,920 - Pf6N2E2_5682 0.80 -0.3
6,495,990 + Pf6N2E2_5682 0.89 +0.2
6,495,990 + Pf6N2E2_5682 0.89 +1.6
6,495,991 - Pf6N2E2_5682 0.89 +1.1
6,495,991 - Pf6N2E2_5682 0.89 -1.2
6,496,118 + +0.2
6,496,119 - +0.9
6,496,163 + -0.2
6,496,164 - -0.6
6,496,232 + +0.8
6,496,416 - Pf6N2E2_5683 0.67 -2.4
6,496,516 - -0.6
6,496,571 + -1.4
6,496,571 + -2.0
6,496,571 + -1.8
6,496,571 + -1.1
6,496,572 - -1.0
6,496,572 - -1.6
6,496,572 - -2.4
6,496,572 - -1.4
6,496,572 - -0.9
6,496,572 - -1.3
6,496,572 - -1.4
6,496,572 - -0.3
6,496,573 + -0.5
6,496,574 - +0.6
6,496,574 - -1.7
6,496,574 - -1.7
6,496,574 - -0.5
6,496,574 - +1.9
6,496,574 - -1.2
6,496,574 - +0.8
6,496,574 - -0.2
6,496,574 - -1.6
6,496,574 - -0.6
6,496,577 + +0.1
6,496,628 + +0.2
6,496,629 - +1.2
6,496,828 + +0.4
6,496,828 + +0.5
6,496,828 + -0.4
6,496,828 + -1.8
6,496,828 + -1.8
6,496,829 - +0.7
6,496,891 - +1.2
6,496,917 - -0.2
6,496,919 + -3.3
6,496,983 + -0.4
6,496,983 + +0.4
6,496,984 - +0.3
6,496,993 + -0.4
6,496,993 + +0.8
6,496,993 + -0.3
6,496,993 + -0.1
6,496,994 - +0.5
6,496,994 - -2.8
6,496,994 - -0.6
6,496,994 - +2.2
6,496,996 + +0.1
6,496,996 + +0.5
6,496,996 + -0.7
6,496,996 + +0.4
6,496,996 + -0.0
6,496,996 + +0.6
6,496,996 + +0.5
6,496,997 - +1.0
6,496,997 - -0.1
6,497,005 - +0.8
6,497,005 - +0.9
6,497,005 - -1.1
6,497,011 - +0.6
6,497,011 - +1.0
6,497,175 + -0.4
6,497,178 + +0.3
6,497,179 - -0.6
6,497,238 + +0.2
6,497,238 + -1.0
6,497,239 - -0.4

Or see this region's nucleotide sequence