Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5588

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5586 and Pf6N2E2_5587 are separated by 187 nucleotidesPf6N2E2_5587 and Pf6N2E2_5588 overlap by 4 nucleotidesPf6N2E2_5588 and Pf6N2E2_5589 are separated by 190 nucleotides Pf6N2E2_5586 - Alkyl hydroperoxide reductase subunit C-like protein, at 6,403,669 to 6,404,271 _5586 Pf6N2E2_5587 - Ribonuclease T (EC 3.1.13.-), at 6,404,459 to 6,405,136 _5587 Pf6N2E2_5588 - Dihydroorotase (EC 3.5.2.3), at 6,405,133 to 6,406,179 _5588 Pf6N2E2_5589 - Sodium-type flagellar protein motY precursor, at 6,406,370 to 6,407,347 _5589 Position (kb) 6405 6406 6407Strain fitness (log2 ratio) -2 -1 0 1at 6404.242 kb on + strandat 6404.242 kb on + strandat 6404.269 kb on + strandat 6404.269 kb on + strandat 6404.269 kb on + strandat 6404.269 kb on + strandat 6404.269 kb on + strandat 6404.269 kb on + strandat 6404.284 kb on + strandat 6404.284 kb on + strandat 6404.317 kb on + strandat 6404.328 kb on + strandat 6404.329 kb on - strandat 6406.265 kb on + strandat 6406.265 kb on + strandat 6406.266 kb on - strandat 6406.271 kb on + strandat 6406.278 kb on + strandat 6406.278 kb on + strandat 6406.278 kb on + strandat 6406.279 kb on - strandat 6406.279 kb on - strandat 6406.347 kb on + strandat 6406.348 kb on - strandat 6406.349 kb on + strandat 6406.349 kb on + strandat 6406.349 kb on + strandat 6406.349 kb on + strandat 6406.349 kb on + strandat 6406.350 kb on - strandat 6406.350 kb on - strandat 6406.382 kb on + strandat 6406.382 kb on + strandat 6406.386 kb on + strandat 6406.386 kb on + strandat 6406.386 kb on + strandat 6406.386 kb on + strandat 6406.386 kb on + strandat 6406.387 kb on - strandat 6406.387 kb on - strandat 6406.387 kb on - strandat 6406.574 kb on + strand, within Pf6N2E2_5589at 6406.574 kb on + strand, within Pf6N2E2_5589at 6406.574 kb on + strand, within Pf6N2E2_5589at 6406.574 kb on + strand, within Pf6N2E2_5589at 6406.575 kb on - strand, within Pf6N2E2_5589at 6406.575 kb on - strand, within Pf6N2E2_5589at 6406.576 kb on + strand, within Pf6N2E2_5589at 6406.576 kb on + strand, within Pf6N2E2_5589at 6406.577 kb on - strand, within Pf6N2E2_5589at 6406.577 kb on - strand, within Pf6N2E2_5589at 6406.758 kb on + strand, within Pf6N2E2_5589at 6406.759 kb on - strand, within Pf6N2E2_5589at 6407.158 kb on + strand, within Pf6N2E2_5589at 6407.159 kb on - strand, within Pf6N2E2_5589at 6407.159 kb on - strand, within Pf6N2E2_5589

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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6,404,242 + -0.5
6,404,242 + +0.1
6,404,269 + -1.1
6,404,269 + -0.5
6,404,269 + -1.5
6,404,269 + +0.1
6,404,269 + -0.7
6,404,269 + -2.0
6,404,284 + -2.3
6,404,284 + -1.5
6,404,317 + +0.5
6,404,328 + +1.1
6,404,329 - +0.2
6,406,265 + +0.7
6,406,265 + -0.9
6,406,266 - +1.5
6,406,271 + -0.1
6,406,278 + +0.8
6,406,278 + +0.0
6,406,278 + -0.8
6,406,279 - -0.5
6,406,279 - +1.2
6,406,347 + +0.1
6,406,348 - -1.0
6,406,349 + -1.3
6,406,349 + -2.5
6,406,349 + +0.3
6,406,349 + +0.5
6,406,349 + -0.2
6,406,350 - +1.1
6,406,350 - +0.3
6,406,382 + +0.9
6,406,382 + -0.2
6,406,386 + -0.0
6,406,386 + -0.9
6,406,386 + +1.6
6,406,386 + +0.6
6,406,386 + -0.3
6,406,387 - -1.1
6,406,387 - +1.2
6,406,387 - +1.2
6,406,574 + Pf6N2E2_5589 0.21 +0.4
6,406,574 + Pf6N2E2_5589 0.21 +0.2
6,406,574 + Pf6N2E2_5589 0.21 +1.7
6,406,574 + Pf6N2E2_5589 0.21 -0.5
6,406,575 - Pf6N2E2_5589 0.21 +1.6
6,406,575 - Pf6N2E2_5589 0.21 +0.1
6,406,576 + Pf6N2E2_5589 0.21 -0.2
6,406,576 + Pf6N2E2_5589 0.21 +0.5
6,406,577 - Pf6N2E2_5589 0.21 +1.3
6,406,577 - Pf6N2E2_5589 0.21 +0.6
6,406,758 + Pf6N2E2_5589 0.40 +0.1
6,406,759 - Pf6N2E2_5589 0.40 +0.7
6,407,158 + Pf6N2E2_5589 0.81 -0.3
6,407,159 - Pf6N2E2_5589 0.81 +0.6
6,407,159 - Pf6N2E2_5589 0.81 -1.5

Or see this region's nucleotide sequence