Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5586 and Pf6N2E2_5587 are separated by 187 nucleotides Pf6N2E2_5587 and Pf6N2E2_5588 overlap by 4 nucleotides Pf6N2E2_5588 and Pf6N2E2_5589 are separated by 190 nucleotides
Pf6N2E2_5586 - Alkyl hydroperoxide reductase subunit C-like protein, at 6,403,669 to 6,404,271
_5586
Pf6N2E2_5587 - Ribonuclease T (EC 3.1.13.-), at 6,404,459 to 6,405,136
_5587
Pf6N2E2_5588 - Dihydroorotase (EC 3.5.2.3), at 6,405,133 to 6,406,179
_5588
Pf6N2E2_5589 - Sodium-type flagellar protein motY precursor, at 6,406,370 to 6,407,347
_5589
Position (kb)
6405
6406
6407 Strain fitness (log2 ratio)
-2
-1
0
1 at 6404.242 kb on + strand at 6404.242 kb on + strand at 6404.269 kb on + strand at 6404.269 kb on + strand at 6404.269 kb on + strand at 6404.269 kb on + strand at 6404.269 kb on + strand at 6404.269 kb on + strand at 6404.284 kb on + strand at 6404.284 kb on + strand at 6404.317 kb on + strand at 6404.328 kb on + strand at 6404.329 kb on - strand at 6406.265 kb on + strand at 6406.265 kb on + strand at 6406.266 kb on - strand at 6406.271 kb on + strand at 6406.278 kb on + strand at 6406.278 kb on + strand at 6406.278 kb on + strand at 6406.279 kb on - strand at 6406.279 kb on - strand at 6406.347 kb on + strand at 6406.348 kb on - strand at 6406.349 kb on + strand at 6406.349 kb on + strand at 6406.349 kb on + strand at 6406.349 kb on + strand at 6406.349 kb on + strand at 6406.350 kb on - strand at 6406.350 kb on - strand at 6406.382 kb on + strand at 6406.382 kb on + strand at 6406.386 kb on + strand at 6406.386 kb on + strand at 6406.386 kb on + strand at 6406.386 kb on + strand at 6406.386 kb on + strand at 6406.387 kb on - strand at 6406.387 kb on - strand at 6406.387 kb on - strand at 6406.574 kb on + strand, within Pf6N2E2_5589 at 6406.574 kb on + strand, within Pf6N2E2_5589 at 6406.574 kb on + strand, within Pf6N2E2_5589 at 6406.574 kb on + strand, within Pf6N2E2_5589 at 6406.575 kb on - strand, within Pf6N2E2_5589 at 6406.575 kb on - strand, within Pf6N2E2_5589 at 6406.576 kb on + strand, within Pf6N2E2_5589 at 6406.576 kb on + strand, within Pf6N2E2_5589 at 6406.577 kb on - strand, within Pf6N2E2_5589 at 6406.577 kb on - strand, within Pf6N2E2_5589 at 6406.758 kb on + strand, within Pf6N2E2_5589 at 6406.759 kb on - strand, within Pf6N2E2_5589 at 6407.158 kb on + strand, within Pf6N2E2_5589 at 6407.159 kb on - strand, within Pf6N2E2_5589 at 6407.159 kb on - strand, within Pf6N2E2_5589
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 6,404,242 + -0.5 6,404,242 + +0.1 6,404,269 + -1.1 6,404,269 + -0.5 6,404,269 + -1.5 6,404,269 + +0.1 6,404,269 + -0.7 6,404,269 + -2.0 6,404,284 + -2.3 6,404,284 + -1.5 6,404,317 + +0.5 6,404,328 + +1.1 6,404,329 - +0.2 6,406,265 + +0.7 6,406,265 + -0.9 6,406,266 - +1.5 6,406,271 + -0.1 6,406,278 + +0.8 6,406,278 + +0.0 6,406,278 + -0.8 6,406,279 - -0.5 6,406,279 - +1.2 6,406,347 + +0.1 6,406,348 - -1.0 6,406,349 + -1.3 6,406,349 + -2.5 6,406,349 + +0.3 6,406,349 + +0.5 6,406,349 + -0.2 6,406,350 - +1.1 6,406,350 - +0.3 6,406,382 + +0.9 6,406,382 + -0.2 6,406,386 + -0.0 6,406,386 + -0.9 6,406,386 + +1.6 6,406,386 + +0.6 6,406,386 + -0.3 6,406,387 - -1.1 6,406,387 - +1.2 6,406,387 - +1.2 6,406,574 + Pf6N2E2_5589 0.21 +0.4 6,406,574 + Pf6N2E2_5589 0.21 +0.2 6,406,574 + Pf6N2E2_5589 0.21 +1.7 6,406,574 + Pf6N2E2_5589 0.21 -0.5 6,406,575 - Pf6N2E2_5589 0.21 +1.6 6,406,575 - Pf6N2E2_5589 0.21 +0.1 6,406,576 + Pf6N2E2_5589 0.21 -0.2 6,406,576 + Pf6N2E2_5589 0.21 +0.5 6,406,577 - Pf6N2E2_5589 0.21 +1.3 6,406,577 - Pf6N2E2_5589 0.21 +0.6 6,406,758 + Pf6N2E2_5589 0.40 +0.1 6,406,759 - Pf6N2E2_5589 0.40 +0.7 6,407,158 + Pf6N2E2_5589 0.81 -0.3 6,407,159 - Pf6N2E2_5589 0.81 +0.6 6,407,159 - Pf6N2E2_5589 0.81 -1.5
Or see this region's nucleotide sequence