Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5587

Experiment: Phosphomycin 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5585 and Pf6N2E2_5586 are separated by 116 nucleotidesPf6N2E2_5586 and Pf6N2E2_5587 are separated by 187 nucleotidesPf6N2E2_5587 and Pf6N2E2_5588 overlap by 4 nucleotides Pf6N2E2_5585 - hypothetical protein, at 6,403,403 to 6,403,552 _5585 Pf6N2E2_5586 - Alkyl hydroperoxide reductase subunit C-like protein, at 6,403,669 to 6,404,271 _5586 Pf6N2E2_5587 - Ribonuclease T (EC 3.1.13.-), at 6,404,459 to 6,405,136 _5587 Pf6N2E2_5588 - Dihydroorotase (EC 3.5.2.3), at 6,405,133 to 6,406,179 _5588 Position (kb) 6404 6405 6406Strain fitness (log2 ratio) -2 -1 0 1at 6403.563 kb on + strandat 6403.563 kb on + strandat 6403.563 kb on + strandat 6403.563 kb on + strandat 6403.563 kb on + strandat 6403.563 kb on + strandat 6403.564 kb on - strandat 6403.564 kb on - strandat 6403.564 kb on - strandat 6403.564 kb on - strandat 6403.564 kb on - strandat 6403.648 kb on + strandat 6403.649 kb on - strandat 6403.651 kb on + strandat 6403.651 kb on + strandat 6403.651 kb on + strandat 6403.651 kb on + strandat 6403.651 kb on + strandat 6403.651 kb on + strandat 6403.651 kb on + strandat 6403.652 kb on - strandat 6403.652 kb on - strandat 6403.652 kb on - strandat 6403.663 kb on + strandat 6403.676 kb on + strandat 6403.677 kb on - strandat 6403.682 kb on + strandat 6403.777 kb on + strand, within Pf6N2E2_5586at 6403.795 kb on + strand, within Pf6N2E2_5586at 6403.795 kb on + strand, within Pf6N2E2_5586at 6403.969 kb on + strand, within Pf6N2E2_5586at 6403.969 kb on + strand, within Pf6N2E2_5586at 6403.969 kb on + strand, within Pf6N2E2_5586at 6403.969 kb on + strand, within Pf6N2E2_5586at 6403.969 kb on + strand, within Pf6N2E2_5586at 6403.969 kb on + strand, within Pf6N2E2_5586at 6403.969 kb on + strand, within Pf6N2E2_5586at 6403.970 kb on - strand, within Pf6N2E2_5586at 6403.970 kb on - strand, within Pf6N2E2_5586at 6403.970 kb on - strand, within Pf6N2E2_5586at 6403.970 kb on - strand, within Pf6N2E2_5586at 6403.970 kb on - strand, within Pf6N2E2_5586at 6404.011 kb on + strand, within Pf6N2E2_5586at 6404.011 kb on + strand, within Pf6N2E2_5586at 6404.011 kb on + strand, within Pf6N2E2_5586at 6404.011 kb on + strand, within Pf6N2E2_5586at 6404.011 kb on + strand, within Pf6N2E2_5586at 6404.115 kb on + strand, within Pf6N2E2_5586at 6404.115 kb on + strand, within Pf6N2E2_5586at 6404.116 kb on - strand, within Pf6N2E2_5586at 6404.242 kb on + strandat 6404.242 kb on + strandat 6404.269 kb on + strandat 6404.269 kb on + strandat 6404.269 kb on + strandat 6404.269 kb on + strandat 6404.269 kb on + strandat 6404.269 kb on + strandat 6404.284 kb on + strandat 6404.284 kb on + strandat 6404.317 kb on + strandat 6404.328 kb on + strandat 6404.329 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
remove
6,403,563 + -0.2
6,403,563 + -0.4
6,403,563 + +0.1
6,403,563 + -0.6
6,403,563 + -1.0
6,403,563 + -2.1
6,403,564 - -0.3
6,403,564 - +1.2
6,403,564 - +0.6
6,403,564 - -0.6
6,403,564 - +0.6
6,403,648 + +0.6
6,403,649 - -1.3
6,403,651 + +0.4
6,403,651 + -1.3
6,403,651 + -0.3
6,403,651 + -0.5
6,403,651 + -0.0
6,403,651 + -0.4
6,403,651 + -0.3
6,403,652 - -0.2
6,403,652 - -0.8
6,403,652 - -0.7
6,403,663 + -1.5
6,403,676 + +0.6
6,403,677 - -2.3
6,403,682 + -0.9
6,403,777 + Pf6N2E2_5586 0.18 +1.1
6,403,795 + Pf6N2E2_5586 0.21 -1.4
6,403,795 + Pf6N2E2_5586 0.21 +0.9
6,403,969 + Pf6N2E2_5586 0.50 -0.9
6,403,969 + Pf6N2E2_5586 0.50 -0.5
6,403,969 + Pf6N2E2_5586 0.50 -1.8
6,403,969 + Pf6N2E2_5586 0.50 -1.0
6,403,969 + Pf6N2E2_5586 0.50 -0.9
6,403,969 + Pf6N2E2_5586 0.50 -1.4
6,403,969 + Pf6N2E2_5586 0.50 -1.9
6,403,970 - Pf6N2E2_5586 0.50 -1.6
6,403,970 - Pf6N2E2_5586 0.50 -0.7
6,403,970 - Pf6N2E2_5586 0.50 -1.1
6,403,970 - Pf6N2E2_5586 0.50 -0.8
6,403,970 - Pf6N2E2_5586 0.50 +0.3
6,404,011 + Pf6N2E2_5586 0.57 -0.4
6,404,011 + Pf6N2E2_5586 0.57 -0.3
6,404,011 + Pf6N2E2_5586 0.57 -1.1
6,404,011 + Pf6N2E2_5586 0.57 -0.7
6,404,011 + Pf6N2E2_5586 0.57 -1.8
6,404,115 + Pf6N2E2_5586 0.74 -0.4
6,404,115 + Pf6N2E2_5586 0.74 +0.4
6,404,116 - Pf6N2E2_5586 0.74 -1.4
6,404,242 + -0.5
6,404,242 + +0.1
6,404,269 + -1.1
6,404,269 + -0.5
6,404,269 + -1.5
6,404,269 + +0.1
6,404,269 + -0.7
6,404,269 + -2.0
6,404,284 + -2.3
6,404,284 + -1.5
6,404,317 + +0.5
6,404,328 + +1.1
6,404,329 - +0.2

Or see this region's nucleotide sequence