Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_536

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_533 and Pf6N2E2_534 overlap by 4 nucleotidesPf6N2E2_534 and Pf6N2E2_535 overlap by 4 nucleotidesPf6N2E2_535 and Pf6N2E2_536 overlap by 4 nucleotidesPf6N2E2_536 and Pf6N2E2_537 overlap by 4 nucleotidesPf6N2E2_537 and Pf6N2E2_538 overlap by 1 nucleotides Pf6N2E2_533 - Na(+) H(+) antiporter subunit G, at 601,734 to 602,087 _533 Pf6N2E2_534 - Na(+) H(+) antiporter subunit F, at 602,084 to 602,362 _534 Pf6N2E2_535 - Na(+) H(+) antiporter subunit E, at 602,359 to 602,847 _535 Pf6N2E2_536 - Na(+) H(+) antiporter subunit D, at 602,844 to 604,529 _536 Pf6N2E2_537 - Na(+) H(+) antiporter subunit C, at 604,526 to 604,870 _537 Pf6N2E2_538 - Na(+) H(+) antiporter subunit A; Na(+) H(+) antiporter subunit B, at 604,870 to 607,794 _538 Position (kb) 602 603 604 605Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 601.979 kb on - strand, within Pf6N2E2_533at 601.979 kb on - strand, within Pf6N2E2_533at 601.979 kb on - strand, within Pf6N2E2_533at 601.979 kb on - strand, within Pf6N2E2_533at 601.979 kb on - strand, within Pf6N2E2_533at 602.175 kb on + strand, within Pf6N2E2_534at 602.176 kb on - strand, within Pf6N2E2_534at 602.176 kb on - strand, within Pf6N2E2_534at 602.176 kb on - strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.232 kb on + strand, within Pf6N2E2_534at 602.233 kb on - strand, within Pf6N2E2_534at 602.233 kb on - strand, within Pf6N2E2_534at 602.233 kb on - strand, within Pf6N2E2_534at 602.233 kb on - strand, within Pf6N2E2_534at 602.233 kb on - strand, within Pf6N2E2_534at 602.239 kb on - strand, within Pf6N2E2_534at 602.239 kb on - strand, within Pf6N2E2_534at 602.390 kb on + strandat 602.391 kb on - strandat 602.391 kb on - strandat 602.920 kb on + strandat 602.920 kb on + strandat 602.920 kb on + strandat 602.920 kb on + strandat 602.921 kb on - strandat 602.921 kb on - strandat 602.921 kb on - strandat 602.921 kb on - strandat 602.921 kb on - strandat 603.138 kb on + strand, within Pf6N2E2_536at 603.287 kb on + strand, within Pf6N2E2_536at 603.288 kb on - strand, within Pf6N2E2_536at 603.288 kb on - strand, within Pf6N2E2_536at 603.324 kb on + strand, within Pf6N2E2_536at 603.324 kb on + strand, within Pf6N2E2_536at 603.325 kb on - strand, within Pf6N2E2_536at 603.325 kb on - strand, within Pf6N2E2_536at 603.325 kb on - strand, within Pf6N2E2_536at 603.325 kb on - strand, within Pf6N2E2_536at 603.512 kb on - strand, within Pf6N2E2_536at 603.688 kb on + strand, within Pf6N2E2_536at 603.688 kb on + strand, within Pf6N2E2_536at 603.689 kb on - strand, within Pf6N2E2_536at 603.748 kb on + strand, within Pf6N2E2_536at 603.808 kb on + strand, within Pf6N2E2_536at 603.808 kb on + strand, within Pf6N2E2_536at 603.808 kb on + strand, within Pf6N2E2_536at 603.970 kb on + strand, within Pf6N2E2_536at 603.970 kb on + strand, within Pf6N2E2_536at 603.971 kb on - strand, within Pf6N2E2_536at 603.971 kb on - strand, within Pf6N2E2_536at 603.971 kb on - strand, within Pf6N2E2_536at 603.971 kb on - strand, within Pf6N2E2_536at 604.027 kb on + strand, within Pf6N2E2_536at 604.027 kb on + strand, within Pf6N2E2_536at 604.028 kb on - strand, within Pf6N2E2_536at 604.028 kb on - strand, within Pf6N2E2_536at 604.028 kb on - strand, within Pf6N2E2_536at 604.028 kb on - strand, within Pf6N2E2_536at 604.098 kb on + strand, within Pf6N2E2_536at 604.099 kb on - strand, within Pf6N2E2_536at 604.099 kb on - strand, within Pf6N2E2_536at 604.150 kb on + strand, within Pf6N2E2_536at 604.330 kb on + strand, within Pf6N2E2_536at 604.372 kb on + strandat 604.372 kb on + strandat 604.373 kb on - strandat 604.668 kb on + strand, within Pf6N2E2_537at 604.668 kb on + strand, within Pf6N2E2_537at 604.668 kb on + strand, within Pf6N2E2_537at 604.668 kb on + strand, within Pf6N2E2_537at 604.669 kb on - strand, within Pf6N2E2_537at 604.669 kb on - strand, within Pf6N2E2_537at 604.761 kb on + strand, within Pf6N2E2_537at 604.769 kb on + strand, within Pf6N2E2_537at 604.769 kb on + strand, within Pf6N2E2_537at 604.770 kb on - strand, within Pf6N2E2_537at 604.838 kb on + strandat 604.839 kb on - strandat 604.923 kb on + strandat 604.991 kb on + strandat 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.201 kb on + strand, within Pf6N2E2_538at 605.202 kb on - strand, within Pf6N2E2_538at 605.202 kb on - strand, within Pf6N2E2_538at 605.202 kb on - strand, within Pf6N2E2_538at 605.282 kb on + strand, within Pf6N2E2_538at 605.282 kb on + strand, within Pf6N2E2_538at 605.283 kb on - strand, within Pf6N2E2_538at 605.335 kb on + strand, within Pf6N2E2_538

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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601,979 - Pf6N2E2_533 0.69 -0.4
601,979 - Pf6N2E2_533 0.69 -1.1
601,979 - Pf6N2E2_533 0.69 +0.1
601,979 - Pf6N2E2_533 0.69 +0.2
601,979 - Pf6N2E2_533 0.69 -0.2
602,175 + Pf6N2E2_534 0.33 -1.5
602,176 - Pf6N2E2_534 0.33 -0.5
602,176 - Pf6N2E2_534 0.33 -1.9
602,176 - Pf6N2E2_534 0.33 +0.9
602,232 + Pf6N2E2_534 0.53 -1.2
602,232 + Pf6N2E2_534 0.53 -0.1
602,232 + Pf6N2E2_534 0.53 -0.8
602,232 + Pf6N2E2_534 0.53 +0.1
602,232 + Pf6N2E2_534 0.53 -0.4
602,232 + Pf6N2E2_534 0.53 +1.1
602,232 + Pf6N2E2_534 0.53 +0.4
602,233 - Pf6N2E2_534 0.53 -0.5
602,233 - Pf6N2E2_534 0.53 +0.6
602,233 - Pf6N2E2_534 0.53 -0.6
602,233 - Pf6N2E2_534 0.53 -1.4
602,233 - Pf6N2E2_534 0.53 -1.4
602,239 - Pf6N2E2_534 0.56 +0.8
602,239 - Pf6N2E2_534 0.56 -1.9
602,390 + -0.4
602,391 - +0.0
602,391 - +0.2
602,920 + -0.5
602,920 + -1.0
602,920 + -0.7
602,920 + -2.4
602,921 - +0.6
602,921 - -1.2
602,921 - -1.8
602,921 - -0.7
602,921 - -1.2
603,138 + Pf6N2E2_536 0.17 +0.2
603,287 + Pf6N2E2_536 0.26 -1.7
603,288 - Pf6N2E2_536 0.26 -0.5
603,288 - Pf6N2E2_536 0.26 +0.5
603,324 + Pf6N2E2_536 0.28 -0.5
603,324 + Pf6N2E2_536 0.28 +0.2
603,325 - Pf6N2E2_536 0.29 -0.4
603,325 - Pf6N2E2_536 0.29 +0.5
603,325 - Pf6N2E2_536 0.29 +0.0
603,325 - Pf6N2E2_536 0.29 -1.2
603,512 - Pf6N2E2_536 0.40 -0.9
603,688 + Pf6N2E2_536 0.50 -0.9
603,688 + Pf6N2E2_536 0.50 +0.0
603,689 - Pf6N2E2_536 0.50 -0.5
603,748 + Pf6N2E2_536 0.54 +0.4
603,808 + Pf6N2E2_536 0.57 +0.8
603,808 + Pf6N2E2_536 0.57 -0.5
603,808 + Pf6N2E2_536 0.57 +0.6
603,970 + Pf6N2E2_536 0.67 -1.4
603,970 + Pf6N2E2_536 0.67 -0.1
603,971 - Pf6N2E2_536 0.67 -0.5
603,971 - Pf6N2E2_536 0.67 -1.7
603,971 - Pf6N2E2_536 0.67 -2.8
603,971 - Pf6N2E2_536 0.67 +0.4
604,027 + Pf6N2E2_536 0.70 +0.3
604,027 + Pf6N2E2_536 0.70 +2.4
604,028 - Pf6N2E2_536 0.70 +0.2
604,028 - Pf6N2E2_536 0.70 -1.6
604,028 - Pf6N2E2_536 0.70 +1.1
604,028 - Pf6N2E2_536 0.70 -3.2
604,098 + Pf6N2E2_536 0.74 -0.1
604,099 - Pf6N2E2_536 0.74 +0.2
604,099 - Pf6N2E2_536 0.74 -2.0
604,150 + Pf6N2E2_536 0.77 -0.9
604,330 + Pf6N2E2_536 0.88 +1.0
604,372 + +0.8
604,372 + -0.7
604,373 - +2.0
604,668 + Pf6N2E2_537 0.41 -1.1
604,668 + Pf6N2E2_537 0.41 -1.6
604,668 + Pf6N2E2_537 0.41 -3.2
604,668 + Pf6N2E2_537 0.41 -0.1
604,669 - Pf6N2E2_537 0.41 -1.0
604,669 - Pf6N2E2_537 0.41 -0.9
604,761 + Pf6N2E2_537 0.68 -1.6
604,769 + Pf6N2E2_537 0.70 +0.3
604,769 + Pf6N2E2_537 0.70 -0.9
604,770 - Pf6N2E2_537 0.71 -0.3
604,838 + -0.1
604,839 - -2.8
604,923 + +0.2
604,991 + +0.8
605,201 + Pf6N2E2_538 0.11 -1.7
605,201 + Pf6N2E2_538 0.11 -0.1
605,201 + Pf6N2E2_538 0.11 -1.7
605,201 + Pf6N2E2_538 0.11 +0.2
605,201 + Pf6N2E2_538 0.11 -3.3
605,201 + Pf6N2E2_538 0.11 -1.0
605,201 + Pf6N2E2_538 0.11 -1.0
605,202 - Pf6N2E2_538 0.11 -3.3
605,202 - Pf6N2E2_538 0.11 -0.1
605,202 - Pf6N2E2_538 0.11 -3.0
605,282 + Pf6N2E2_538 0.14 -1.3
605,282 + Pf6N2E2_538 0.14 -0.3
605,283 - Pf6N2E2_538 0.14 -1.1
605,335 + Pf6N2E2_538 0.16 -0.4

Or see this region's nucleotide sequence