Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5224

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5222 and Pf6N2E2_5223 overlap by 7 nucleotidesPf6N2E2_5223 and Pf6N2E2_5224 overlap by 8 nucleotidesPf6N2E2_5224 and Pf6N2E2_5225 are separated by 114 nucleotidesPf6N2E2_5225 and Pf6N2E2_5226 are separated by 59 nucleotides Pf6N2E2_5222 - Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2, at 6,021,016 to 6,021,846 _5222 Pf6N2E2_5223 - Molybdopterin biosynthesis protein MoeB, at 6,021,840 to 6,022,595 _5223 Pf6N2E2_5224 - Glutamate racemase (EC 5.1.1.3), at 6,022,588 to 6,023,379 _5224 Pf6N2E2_5225 - Lipid A 3-O-deacylase, at 6,023,494 to 6,024,012 _5225 Pf6N2E2_5226 - FIG00955589: hypothetical protein, at 6,024,072 to 6,024,377 _5226 Position (kb) 6022 6023 6024Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6021.978 kb on + strand, within Pf6N2E2_5223at 6021.978 kb on + strand, within Pf6N2E2_5223at 6021.978 kb on + strand, within Pf6N2E2_5223at 6021.978 kb on + strand, within Pf6N2E2_5223at 6022.271 kb on + strand, within Pf6N2E2_5223at 6022.353 kb on + strand, within Pf6N2E2_5223at 6022.365 kb on + strand, within Pf6N2E2_5223at 6022.365 kb on + strand, within Pf6N2E2_5223at 6023.334 kb on + strandat 6023.334 kb on + strandat 6023.334 kb on + strandat 6023.339 kb on + strandat 6023.436 kb on - strandat 6023.437 kb on + strandat 6023.466 kb on + strandat 6023.466 kb on + strandat 6023.466 kb on + strandat 6023.466 kb on + strandat 6023.466 kb on + strandat 6023.467 kb on - strandat 6023.467 kb on - strandat 6023.548 kb on + strand, within Pf6N2E2_5225at 6023.548 kb on + strand, within Pf6N2E2_5225at 6023.548 kb on + strand, within Pf6N2E2_5225at 6023.548 kb on + strand, within Pf6N2E2_5225at 6023.548 kb on + strand, within Pf6N2E2_5225at 6023.548 kb on + strand, within Pf6N2E2_5225at 6023.548 kb on + strand, within Pf6N2E2_5225at 6023.548 kb on + strand, within Pf6N2E2_5225at 6023.548 kb on + strand, within Pf6N2E2_5225at 6023.549 kb on - strand, within Pf6N2E2_5225at 6023.549 kb on - strand, within Pf6N2E2_5225at 6023.549 kb on - strand, within Pf6N2E2_5225at 6023.611 kb on + strand, within Pf6N2E2_5225at 6023.612 kb on - strand, within Pf6N2E2_5225at 6023.695 kb on + strand, within Pf6N2E2_5225at 6023.695 kb on + strand, within Pf6N2E2_5225at 6023.696 kb on - strand, within Pf6N2E2_5225at 6023.696 kb on - strand, within Pf6N2E2_5225at 6023.696 kb on - strand, within Pf6N2E2_5225at 6023.696 kb on - strand, within Pf6N2E2_5225at 6023.696 kb on - strand, within Pf6N2E2_5225at 6023.697 kb on + strand, within Pf6N2E2_5225at 6023.697 kb on + strand, within Pf6N2E2_5225at 6023.697 kb on + strand, within Pf6N2E2_5225at 6023.697 kb on + strand, within Pf6N2E2_5225at 6023.697 kb on + strand, within Pf6N2E2_5225at 6023.697 kb on + strand, within Pf6N2E2_5225at 6023.697 kb on + strand, within Pf6N2E2_5225at 6023.697 kb on + strand, within Pf6N2E2_5225at 6023.698 kb on - strand, within Pf6N2E2_5225at 6023.701 kb on + strand, within Pf6N2E2_5225at 6023.701 kb on + strand, within Pf6N2E2_5225at 6023.701 kb on + strand, within Pf6N2E2_5225at 6023.701 kb on + strand, within Pf6N2E2_5225at 6023.701 kb on + strand, within Pf6N2E2_5225at 6023.702 kb on - strand, within Pf6N2E2_5225at 6023.702 kb on - strand, within Pf6N2E2_5225at 6023.702 kb on - strand, within Pf6N2E2_5225at 6023.791 kb on + strand, within Pf6N2E2_5225at 6023.791 kb on + strand, within Pf6N2E2_5225at 6023.791 kb on + strand, within Pf6N2E2_5225at 6023.791 kb on + strand, within Pf6N2E2_5225at 6023.791 kb on + strand, within Pf6N2E2_5225at 6023.791 kb on + strand, within Pf6N2E2_5225at 6023.791 kb on + strand, within Pf6N2E2_5225at 6023.792 kb on - strand, within Pf6N2E2_5225at 6023.792 kb on - strand, within Pf6N2E2_5225at 6023.792 kb on - strand, within Pf6N2E2_5225at 6023.792 kb on - strand, within Pf6N2E2_5225at 6023.938 kb on + strand, within Pf6N2E2_5225at 6023.938 kb on + strand, within Pf6N2E2_5225at 6023.975 kb on + strandat 6023.975 kb on + strandat 6023.975 kb on + strandat 6023.975 kb on + strandat 6023.976 kb on - strandat 6023.976 kb on - strandat 6024.008 kb on + strandat 6024.011 kb on - strandat 6024.011 kb on - strandat 6024.055 kb on + strandat 6024.055 kb on + strandat 6024.055 kb on + strandat 6024.056 kb on - strandat 6024.056 kb on - strandat 6024.056 kb on - strandat 6024.056 kb on - strandat 6024.164 kb on - strand, within Pf6N2E2_5226at 6024.164 kb on - strand, within Pf6N2E2_5226

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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6,021,978 + Pf6N2E2_5223 0.18 -0.8
6,021,978 + Pf6N2E2_5223 0.18 -1.2
6,021,978 + Pf6N2E2_5223 0.18 -1.6
6,021,978 + Pf6N2E2_5223 0.18 +0.6
6,022,271 + Pf6N2E2_5223 0.57 +0.2
6,022,353 + Pf6N2E2_5223 0.68 +1.0
6,022,365 + Pf6N2E2_5223 0.69 -0.1
6,022,365 + Pf6N2E2_5223 0.69 -0.0
6,023,334 + -2.1
6,023,334 + -1.9
6,023,334 + -4.0
6,023,339 + -1.0
6,023,436 - +1.2
6,023,437 + -0.1
6,023,466 + -1.9
6,023,466 + +1.1
6,023,466 + +0.8
6,023,466 + -0.1
6,023,466 + -0.4
6,023,467 - +1.0
6,023,467 - -0.2
6,023,548 + Pf6N2E2_5225 0.10 +0.5
6,023,548 + Pf6N2E2_5225 0.10 +0.6
6,023,548 + Pf6N2E2_5225 0.10 -0.2
6,023,548 + Pf6N2E2_5225 0.10 +0.5
6,023,548 + Pf6N2E2_5225 0.10 -0.3
6,023,548 + Pf6N2E2_5225 0.10 +1.4
6,023,548 + Pf6N2E2_5225 0.10 +0.4
6,023,548 + Pf6N2E2_5225 0.10 +0.3
6,023,548 + Pf6N2E2_5225 0.10 +2.6
6,023,549 - Pf6N2E2_5225 0.11 +0.3
6,023,549 - Pf6N2E2_5225 0.11 +0.4
6,023,549 - Pf6N2E2_5225 0.11 +0.8
6,023,611 + Pf6N2E2_5225 0.23 -1.6
6,023,612 - Pf6N2E2_5225 0.23 +0.0
6,023,695 + Pf6N2E2_5225 0.39 -0.2
6,023,695 + Pf6N2E2_5225 0.39 +0.4
6,023,696 - Pf6N2E2_5225 0.39 -0.4
6,023,696 - Pf6N2E2_5225 0.39 +0.5
6,023,696 - Pf6N2E2_5225 0.39 +0.7
6,023,696 - Pf6N2E2_5225 0.39 +1.4
6,023,696 - Pf6N2E2_5225 0.39 -0.2
6,023,697 + Pf6N2E2_5225 0.39 +0.8
6,023,697 + Pf6N2E2_5225 0.39 +0.5
6,023,697 + Pf6N2E2_5225 0.39 -0.3
6,023,697 + Pf6N2E2_5225 0.39 -0.8
6,023,697 + Pf6N2E2_5225 0.39 -0.7
6,023,697 + Pf6N2E2_5225 0.39 +0.0
6,023,697 + Pf6N2E2_5225 0.39 +0.5
6,023,697 + Pf6N2E2_5225 0.39 -0.4
6,023,698 - Pf6N2E2_5225 0.39 +0.8
6,023,701 + Pf6N2E2_5225 0.40 +1.0
6,023,701 + Pf6N2E2_5225 0.40 -0.3
6,023,701 + Pf6N2E2_5225 0.40 +0.4
6,023,701 + Pf6N2E2_5225 0.40 +0.2
6,023,701 + Pf6N2E2_5225 0.40 -0.7
6,023,702 - Pf6N2E2_5225 0.40 +0.6
6,023,702 - Pf6N2E2_5225 0.40 +0.3
6,023,702 - Pf6N2E2_5225 0.40 -0.2
6,023,791 + Pf6N2E2_5225 0.57 +0.2
6,023,791 + Pf6N2E2_5225 0.57 -1.4
6,023,791 + Pf6N2E2_5225 0.57 +0.5
6,023,791 + Pf6N2E2_5225 0.57 +0.1
6,023,791 + Pf6N2E2_5225 0.57 -1.0
6,023,791 + Pf6N2E2_5225 0.57 -0.7
6,023,791 + Pf6N2E2_5225 0.57 +0.7
6,023,792 - Pf6N2E2_5225 0.57 +0.2
6,023,792 - Pf6N2E2_5225 0.57 +0.2
6,023,792 - Pf6N2E2_5225 0.57 -0.8
6,023,792 - Pf6N2E2_5225 0.57 -0.1
6,023,938 + Pf6N2E2_5225 0.86 +0.6
6,023,938 + Pf6N2E2_5225 0.86 -0.3
6,023,975 + -0.1
6,023,975 + +1.0
6,023,975 + -1.2
6,023,975 + +2.4
6,023,976 - -1.2
6,023,976 - +0.9
6,024,008 + -0.7
6,024,011 - -0.5
6,024,011 - +0.7
6,024,055 + +0.5
6,024,055 + -1.3
6,024,055 + +1.2
6,024,056 - +0.9
6,024,056 - -0.8
6,024,056 - +0.4
6,024,056 - -0.3
6,024,164 - Pf6N2E2_5226 0.30 +0.4
6,024,164 - Pf6N2E2_5226 0.30 +1.7

Or see this region's nucleotide sequence