Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5213

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5211 and Pf6N2E2_5212 are separated by 144 nucleotidesPf6N2E2_5212 and Pf6N2E2_5213 overlap by 14 nucleotidesPf6N2E2_5213 and Pf6N2E2_5214 are separated by 22 nucleotidesPf6N2E2_5214 and Pf6N2E2_5215 are separated by 166 nucleotides Pf6N2E2_5211 - Possible monoamine oxidase, at 6,010,273 to 6,011,394 _5211 Pf6N2E2_5212 - GTP-binding and nucleic acid-binding protein YchF, at 6,011,539 to 6,012,087 _5212 Pf6N2E2_5213 - GTP-binding and nucleic acid-binding protein YchF, at 6,012,074 to 6,012,640 _5213 Pf6N2E2_5214 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 6,012,663 to 6,013,247 _5214 Pf6N2E2_5215 - LSU ribosomal protein L25p, at 6,013,414 to 6,014,016 _5215 Position (kb) 6012 6013Strain fitness (log2 ratio) -1 0 1at 6011.120 kb on + strand, within Pf6N2E2_5211at 6011.120 kb on + strand, within Pf6N2E2_5211at 6011.120 kb on + strand, within Pf6N2E2_5211at 6011.121 kb on - strand, within Pf6N2E2_5211at 6011.121 kb on - strand, within Pf6N2E2_5211at 6011.121 kb on - strand, within Pf6N2E2_5211at 6011.145 kb on + strand, within Pf6N2E2_5211at 6011.145 kb on + strand, within Pf6N2E2_5211at 6011.146 kb on - strand, within Pf6N2E2_5211at 6011.229 kb on + strand, within Pf6N2E2_5211at 6011.230 kb on - strand, within Pf6N2E2_5211at 6011.231 kb on + strand, within Pf6N2E2_5211at 6011.231 kb on + strand, within Pf6N2E2_5211at 6011.231 kb on + strand, within Pf6N2E2_5211at 6011.231 kb on + strand, within Pf6N2E2_5211at 6011.231 kb on + strand, within Pf6N2E2_5211at 6011.231 kb on + strand, within Pf6N2E2_5211at 6011.231 kb on + strand, within Pf6N2E2_5211at 6011.231 kb on + strand, within Pf6N2E2_5211at 6011.232 kb on - strand, within Pf6N2E2_5211at 6011.232 kb on - strand, within Pf6N2E2_5211at 6011.232 kb on - strand, within Pf6N2E2_5211at 6011.255 kb on + strand, within Pf6N2E2_5211at 6011.322 kb on + strandat 6011.322 kb on + strandat 6011.386 kb on - strandat 6011.404 kb on - strandat 6011.415 kb on + strandat 6011.515 kb on - strandat 6011.515 kb on - strandat 6011.586 kb on - strandat 6012.023 kb on + strand, within Pf6N2E2_5212at 6012.658 kb on - strandat 6012.658 kb on - strandat 6012.658 kb on - strandat 6012.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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6,011,120 + Pf6N2E2_5211 0.75 +1.0
6,011,120 + Pf6N2E2_5211 0.75 -0.4
6,011,120 + Pf6N2E2_5211 0.75 -0.6
6,011,121 - Pf6N2E2_5211 0.76 -0.2
6,011,121 - Pf6N2E2_5211 0.76 -0.2
6,011,121 - Pf6N2E2_5211 0.76 +1.1
6,011,145 + Pf6N2E2_5211 0.78 +0.5
6,011,145 + Pf6N2E2_5211 0.78 +0.1
6,011,146 - Pf6N2E2_5211 0.78 +0.2
6,011,229 + Pf6N2E2_5211 0.85 +0.5
6,011,230 - Pf6N2E2_5211 0.85 +0.3
6,011,231 + Pf6N2E2_5211 0.85 -0.8
6,011,231 + Pf6N2E2_5211 0.85 -0.0
6,011,231 + Pf6N2E2_5211 0.85 -0.9
6,011,231 + Pf6N2E2_5211 0.85 +0.7
6,011,231 + Pf6N2E2_5211 0.85 -0.1
6,011,231 + Pf6N2E2_5211 0.85 +0.4
6,011,231 + Pf6N2E2_5211 0.85 -0.6
6,011,231 + Pf6N2E2_5211 0.85 +0.6
6,011,232 - Pf6N2E2_5211 0.85 -1.7
6,011,232 - Pf6N2E2_5211 0.85 +0.8
6,011,232 - Pf6N2E2_5211 0.85 +0.6
6,011,255 + Pf6N2E2_5211 0.88 +1.4
6,011,322 + -0.4
6,011,322 + +0.9
6,011,386 - -0.5
6,011,404 - -0.6
6,011,415 + -0.8
6,011,515 - +0.4
6,011,515 - +1.2
6,011,586 - +1.6
6,012,023 + Pf6N2E2_5212 0.88 -0.6
6,012,658 - +1.0
6,012,658 - +0.8
6,012,658 - +0.4
6,012,658 - +0.4

Or see this region's nucleotide sequence