Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5211 and Pf6N2E2_5212 are separated by 144 nucleotides Pf6N2E2_5212 and Pf6N2E2_5213 overlap by 14 nucleotides Pf6N2E2_5213 and Pf6N2E2_5214 are separated by 22 nucleotides
Pf6N2E2_5211 - Possible monoamine oxidase, at 6,010,273 to 6,011,394
_5211
Pf6N2E2_5212 - GTP-binding and nucleic acid-binding protein YchF, at 6,011,539 to 6,012,087
_5212
Pf6N2E2_5213 - GTP-binding and nucleic acid-binding protein YchF, at 6,012,074 to 6,012,640
_5213
Pf6N2E2_5214 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 6,012,663 to 6,013,247
_5214
Position (kb)
6011
6012
6013 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6010.560 kb on + strand, within Pf6N2E2_5211 at 6010.561 kb on - strand, within Pf6N2E2_5211 at 6010.596 kb on + strand, within Pf6N2E2_5211 at 6010.597 kb on - strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.598 kb on + strand, within Pf6N2E2_5211 at 6010.599 kb on - strand, within Pf6N2E2_5211 at 6010.599 kb on - strand, within Pf6N2E2_5211 at 6010.599 kb on - strand, within Pf6N2E2_5211 at 6010.599 kb on - strand, within Pf6N2E2_5211 at 6010.599 kb on - strand, within Pf6N2E2_5211 at 6010.624 kb on - strand, within Pf6N2E2_5211 at 6010.706 kb on + strand, within Pf6N2E2_5211 at 6010.713 kb on - strand, within Pf6N2E2_5211 at 6010.747 kb on + strand, within Pf6N2E2_5211 at 6010.767 kb on + strand, within Pf6N2E2_5211 at 6010.767 kb on + strand, within Pf6N2E2_5211 at 6010.769 kb on + strand, within Pf6N2E2_5211 at 6010.769 kb on + strand, within Pf6N2E2_5211 at 6010.769 kb on + strand, within Pf6N2E2_5211 at 6010.769 kb on + strand, within Pf6N2E2_5211 at 6010.769 kb on + strand, within Pf6N2E2_5211 at 6010.869 kb on + strand, within Pf6N2E2_5211 at 6010.869 kb on + strand, within Pf6N2E2_5211 at 6010.870 kb on - strand, within Pf6N2E2_5211 at 6010.873 kb on + strand, within Pf6N2E2_5211 at 6010.873 kb on + strand, within Pf6N2E2_5211 at 6010.874 kb on - strand, within Pf6N2E2_5211 at 6010.874 kb on - strand, within Pf6N2E2_5211 at 6010.874 kb on - strand, within Pf6N2E2_5211 at 6010.874 kb on - strand, within Pf6N2E2_5211 at 6010.885 kb on + strand, within Pf6N2E2_5211 at 6010.885 kb on + strand, within Pf6N2E2_5211 at 6010.886 kb on - strand, within Pf6N2E2_5211 at 6010.949 kb on + strand, within Pf6N2E2_5211 at 6010.949 kb on + strand, within Pf6N2E2_5211 at 6010.972 kb on - strand, within Pf6N2E2_5211 at 6010.972 kb on - strand, within Pf6N2E2_5211 at 6011.003 kb on + strand, within Pf6N2E2_5211 at 6011.003 kb on + strand, within Pf6N2E2_5211 at 6011.003 kb on + strand, within Pf6N2E2_5211 at 6011.004 kb on - strand, within Pf6N2E2_5211 at 6011.007 kb on + strand, within Pf6N2E2_5211 at 6011.007 kb on + strand, within Pf6N2E2_5211 at 6011.007 kb on + strand, within Pf6N2E2_5211 at 6011.007 kb on + strand, within Pf6N2E2_5211 at 6011.007 kb on + strand, within Pf6N2E2_5211 at 6011.008 kb on - strand, within Pf6N2E2_5211 at 6011.008 kb on - strand, within Pf6N2E2_5211 at 6011.008 kb on - strand, within Pf6N2E2_5211 at 6011.008 kb on - strand, within Pf6N2E2_5211 at 6011.037 kb on + strand, within Pf6N2E2_5211 at 6011.037 kb on + strand, within Pf6N2E2_5211 at 6011.037 kb on + strand, within Pf6N2E2_5211 at 6011.037 kb on + strand, within Pf6N2E2_5211 at 6011.037 kb on + strand, within Pf6N2E2_5211 at 6011.037 kb on + strand, within Pf6N2E2_5211 at 6011.037 kb on + strand, within Pf6N2E2_5211 at 6011.037 kb on + strand, within Pf6N2E2_5211 at 6011.037 kb on + strand, within Pf6N2E2_5211 at 6011.038 kb on - strand, within Pf6N2E2_5211 at 6011.038 kb on - strand, within Pf6N2E2_5211 at 6011.038 kb on - strand, within Pf6N2E2_5211 at 6011.038 kb on - strand, within Pf6N2E2_5211 at 6011.038 kb on - strand, within Pf6N2E2_5211 at 6011.038 kb on - strand, within Pf6N2E2_5211 at 6011.038 kb on - strand, within Pf6N2E2_5211 at 6011.038 kb on - strand, within Pf6N2E2_5211 at 6011.120 kb on + strand, within Pf6N2E2_5211 at 6011.120 kb on + strand, within Pf6N2E2_5211 at 6011.120 kb on + strand, within Pf6N2E2_5211 at 6011.121 kb on - strand, within Pf6N2E2_5211 at 6011.121 kb on - strand, within Pf6N2E2_5211 at 6011.121 kb on - strand, within Pf6N2E2_5211 at 6011.145 kb on + strand, within Pf6N2E2_5211 at 6011.145 kb on + strand, within Pf6N2E2_5211 at 6011.146 kb on - strand, within Pf6N2E2_5211 at 6011.229 kb on + strand, within Pf6N2E2_5211 at 6011.230 kb on - strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.232 kb on - strand, within Pf6N2E2_5211 at 6011.232 kb on - strand, within Pf6N2E2_5211 at 6011.232 kb on - strand, within Pf6N2E2_5211 at 6011.255 kb on + strand, within Pf6N2E2_5211 at 6011.322 kb on + strand at 6011.322 kb on + strand at 6011.386 kb on - strand at 6011.404 kb on - strand at 6011.415 kb on + strand at 6011.515 kb on - strand at 6011.515 kb on - strand at 6011.586 kb on - strand at 6012.023 kb on + strand, within Pf6N2E2_5212 at 6012.658 kb on - strand at 6012.658 kb on - strand at 6012.658 kb on - strand at 6012.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 6,010,560 + Pf6N2E2_5211 0.26 -0.8 6,010,561 - Pf6N2E2_5211 0.26 -0.3 6,010,596 + Pf6N2E2_5211 0.29 +0.2 6,010,597 - Pf6N2E2_5211 0.29 +0.8 6,010,598 + Pf6N2E2_5211 0.29 +1.1 6,010,598 + Pf6N2E2_5211 0.29 +0.1 6,010,598 + Pf6N2E2_5211 0.29 +0.3 6,010,598 + Pf6N2E2_5211 0.29 +0.6 6,010,598 + Pf6N2E2_5211 0.29 +0.4 6,010,598 + Pf6N2E2_5211 0.29 -0.3 6,010,598 + Pf6N2E2_5211 0.29 +0.7 6,010,598 + Pf6N2E2_5211 0.29 -1.2 6,010,598 + Pf6N2E2_5211 0.29 -2.7 6,010,598 + Pf6N2E2_5211 0.29 +0.3 6,010,598 + Pf6N2E2_5211 0.29 -0.8 6,010,598 + Pf6N2E2_5211 0.29 -0.1 6,010,598 + Pf6N2E2_5211 0.29 +0.8 6,010,599 - Pf6N2E2_5211 0.29 +0.9 6,010,599 - Pf6N2E2_5211 0.29 -0.7 6,010,599 - Pf6N2E2_5211 0.29 +1.6 6,010,599 - Pf6N2E2_5211 0.29 -1.2 6,010,599 - Pf6N2E2_5211 0.29 +0.4 6,010,624 - Pf6N2E2_5211 0.31 -2.3 6,010,706 + Pf6N2E2_5211 0.39 -0.8 6,010,713 - Pf6N2E2_5211 0.39 -0.1 6,010,747 + Pf6N2E2_5211 0.42 +0.7 6,010,767 + Pf6N2E2_5211 0.44 -0.0 6,010,767 + Pf6N2E2_5211 0.44 -0.3 6,010,769 + Pf6N2E2_5211 0.44 +1.1 6,010,769 + Pf6N2E2_5211 0.44 +0.2 6,010,769 + Pf6N2E2_5211 0.44 +0.2 6,010,769 + Pf6N2E2_5211 0.44 +0.5 6,010,769 + Pf6N2E2_5211 0.44 -0.6 6,010,869 + Pf6N2E2_5211 0.53 -0.4 6,010,869 + Pf6N2E2_5211 0.53 +0.1 6,010,870 - Pf6N2E2_5211 0.53 +0.1 6,010,873 + Pf6N2E2_5211 0.53 +0.5 6,010,873 + Pf6N2E2_5211 0.53 -0.4 6,010,874 - Pf6N2E2_5211 0.54 +0.7 6,010,874 - Pf6N2E2_5211 0.54 +0.3 6,010,874 - Pf6N2E2_5211 0.54 +0.6 6,010,874 - Pf6N2E2_5211 0.54 +0.3 6,010,885 + Pf6N2E2_5211 0.55 -2.0 6,010,885 + Pf6N2E2_5211 0.55 +0.0 6,010,886 - Pf6N2E2_5211 0.55 +1.3 6,010,949 + Pf6N2E2_5211 0.60 -0.1 6,010,949 + Pf6N2E2_5211 0.60 -1.2 6,010,972 - Pf6N2E2_5211 0.62 +0.9 6,010,972 - Pf6N2E2_5211 0.62 +0.2 6,011,003 + Pf6N2E2_5211 0.65 +0.5 6,011,003 + Pf6N2E2_5211 0.65 -0.2 6,011,003 + Pf6N2E2_5211 0.65 +0.6 6,011,004 - Pf6N2E2_5211 0.65 +0.1 6,011,007 + Pf6N2E2_5211 0.65 -0.0 6,011,007 + Pf6N2E2_5211 0.65 -0.9 6,011,007 + Pf6N2E2_5211 0.65 +1.4 6,011,007 + Pf6N2E2_5211 0.65 -1.2 6,011,007 + Pf6N2E2_5211 0.65 +0.9 6,011,008 - Pf6N2E2_5211 0.66 +1.0 6,011,008 - Pf6N2E2_5211 0.66 +0.7 6,011,008 - Pf6N2E2_5211 0.66 +0.8 6,011,008 - Pf6N2E2_5211 0.66 -1.1 6,011,037 + Pf6N2E2_5211 0.68 -0.6 6,011,037 + Pf6N2E2_5211 0.68 +0.4 6,011,037 + Pf6N2E2_5211 0.68 -2.8 6,011,037 + Pf6N2E2_5211 0.68 +0.3 6,011,037 + Pf6N2E2_5211 0.68 +0.4 6,011,037 + Pf6N2E2_5211 0.68 -1.5 6,011,037 + Pf6N2E2_5211 0.68 -0.9 6,011,037 + Pf6N2E2_5211 0.68 -0.4 6,011,037 + Pf6N2E2_5211 0.68 +1.0 6,011,038 - Pf6N2E2_5211 0.68 +0.9 6,011,038 - Pf6N2E2_5211 0.68 +0.2 6,011,038 - Pf6N2E2_5211 0.68 +0.2 6,011,038 - Pf6N2E2_5211 0.68 +0.1 6,011,038 - Pf6N2E2_5211 0.68 +0.0 6,011,038 - Pf6N2E2_5211 0.68 +0.9 6,011,038 - Pf6N2E2_5211 0.68 -0.4 6,011,038 - Pf6N2E2_5211 0.68 +0.5 6,011,120 + Pf6N2E2_5211 0.75 +1.0 6,011,120 + Pf6N2E2_5211 0.75 -0.4 6,011,120 + Pf6N2E2_5211 0.75 -0.6 6,011,121 - Pf6N2E2_5211 0.76 -0.2 6,011,121 - Pf6N2E2_5211 0.76 -0.2 6,011,121 - Pf6N2E2_5211 0.76 +1.1 6,011,145 + Pf6N2E2_5211 0.78 +0.5 6,011,145 + Pf6N2E2_5211 0.78 +0.1 6,011,146 - Pf6N2E2_5211 0.78 +0.2 6,011,229 + Pf6N2E2_5211 0.85 +0.5 6,011,230 - Pf6N2E2_5211 0.85 +0.3 6,011,231 + Pf6N2E2_5211 0.85 -0.8 6,011,231 + Pf6N2E2_5211 0.85 -0.0 6,011,231 + Pf6N2E2_5211 0.85 -0.9 6,011,231 + Pf6N2E2_5211 0.85 +0.7 6,011,231 + Pf6N2E2_5211 0.85 -0.1 6,011,231 + Pf6N2E2_5211 0.85 +0.4 6,011,231 + Pf6N2E2_5211 0.85 -0.6 6,011,231 + Pf6N2E2_5211 0.85 +0.6 6,011,232 - Pf6N2E2_5211 0.85 -1.7 6,011,232 - Pf6N2E2_5211 0.85 +0.8 6,011,232 - Pf6N2E2_5211 0.85 +0.6 6,011,255 + Pf6N2E2_5211 0.88 +1.4 6,011,322 + -0.4 6,011,322 + +0.9 6,011,386 - -0.5 6,011,404 - -0.6 6,011,415 + -0.8 6,011,515 - +0.4 6,011,515 - +1.2 6,011,586 - +1.6 6,012,023 + Pf6N2E2_5212 0.88 -0.6 6,012,658 - +1.0 6,012,658 - +0.8 6,012,658 - +0.4 6,012,658 - +0.4
Or see this region's nucleotide sequence