Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5132 and Pf6N2E2_5133 are separated by 69 nucleotides Pf6N2E2_5133 and Pf6N2E2_5134 are separated by 52 nucleotides Pf6N2E2_5134 and Pf6N2E2_5135 are separated by 83 nucleotides
Pf6N2E2_5132 - NADH dehydrogenase (EC 1.6.99.3), at 5,918,438 to 5,919,736
_5132
Pf6N2E2_5133 - FIG00953980: hypothetical protein, at 5,919,806 to 5,919,979
_5133
Pf6N2E2_5134 - FIG060329: MOSC domain protein, at 5,920,032 to 5,920,472
_5134
Pf6N2E2_5135 - FIG00953333: hypothetical protein, at 5,920,556 to 5,921,182
_5135
Position (kb) 5919
5920 Strain fitness (log2 ratio) -2
-1
0
1 at 5918.842 kb on + strand, within Pf6N2E2_5132 at 5918.843 kb on - strand, within Pf6N2E2_5132 at 5919.062 kb on - strand, within Pf6N2E2_5132 at 5919.062 kb on - strand, within Pf6N2E2_5132 at 5919.173 kb on - strand, within Pf6N2E2_5132 at 5919.173 kb on - strand, within Pf6N2E2_5132 at 5919.173 kb on - strand, within Pf6N2E2_5132 at 5919.273 kb on + strand, within Pf6N2E2_5132 at 5919.403 kb on - strand, within Pf6N2E2_5132 at 5919.425 kb on + strand, within Pf6N2E2_5132 at 5919.425 kb on + strand, within Pf6N2E2_5132 at 5919.426 kb on - strand, within Pf6N2E2_5132 at 5919.447 kb on + strand, within Pf6N2E2_5132 at 5919.447 kb on + strand, within Pf6N2E2_5132 at 5919.447 kb on + strand, within Pf6N2E2_5132 at 5919.448 kb on - strand, within Pf6N2E2_5132 at 5919.543 kb on + strand, within Pf6N2E2_5132 at 5919.543 kb on + strand, within Pf6N2E2_5132 at 5919.543 kb on + strand, within Pf6N2E2_5132 at 5919.543 kb on + strand, within Pf6N2E2_5132 at 5919.544 kb on - strand, within Pf6N2E2_5132 at 5919.544 kb on - strand, within Pf6N2E2_5132 at 5919.724 kb on + strand at 5919.724 kb on + strand at 5919.724 kb on + strand at 5919.724 kb on + strand at 5919.743 kb on - strand at 5919.809 kb on + strand at 5919.819 kb on + strand at 5919.820 kb on - strand at 5919.820 kb on - strand at 5919.933 kb on + strand, within Pf6N2E2_5133 at 5919.933 kb on + strand, within Pf6N2E2_5133 at 5919.934 kb on - strand, within Pf6N2E2_5133 at 5919.979 kb on + strand at 5919.980 kb on - strand at 5919.980 kb on - strand at 5919.980 kb on - strand at 5919.980 kb on - strand at 5920.020 kb on + strand at 5920.055 kb on - strand at 5920.117 kb on - strand, within Pf6N2E2_5134 at 5920.117 kb on - strand, within Pf6N2E2_5134 at 5920.163 kb on + strand, within Pf6N2E2_5134 at 5920.164 kb on - strand, within Pf6N2E2_5134 at 5920.164 kb on - strand, within Pf6N2E2_5134 at 5920.695 kb on + strand, within Pf6N2E2_5135 at 5920.696 kb on - strand, within Pf6N2E2_5135 at 5920.800 kb on + strand, within Pf6N2E2_5135 at 5920.801 kb on - strand, within Pf6N2E2_5135 at 5920.887 kb on - strand, within Pf6N2E2_5135 at 5920.887 kb on - strand, within Pf6N2E2_5135
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 5,918,842 + Pf6N2E2_5132 0.31 -1.5 5,918,843 - Pf6N2E2_5132 0.31 -0.6 5,919,062 - Pf6N2E2_5132 0.48 +0.6 5,919,062 - Pf6N2E2_5132 0.48 +0.1 5,919,173 - Pf6N2E2_5132 0.57 +0.1 5,919,173 - Pf6N2E2_5132 0.57 -0.6 5,919,173 - Pf6N2E2_5132 0.57 +0.5 5,919,273 + Pf6N2E2_5132 0.64 +0.2 5,919,403 - Pf6N2E2_5132 0.74 -0.7 5,919,425 + Pf6N2E2_5132 0.76 +0.5 5,919,425 + Pf6N2E2_5132 0.76 +1.2 5,919,426 - Pf6N2E2_5132 0.76 +0.5 5,919,447 + Pf6N2E2_5132 0.78 +0.8 5,919,447 + Pf6N2E2_5132 0.78 +0.3 5,919,447 + Pf6N2E2_5132 0.78 -1.9 5,919,448 - Pf6N2E2_5132 0.78 +1.3 5,919,543 + Pf6N2E2_5132 0.85 +1.6 5,919,543 + Pf6N2E2_5132 0.85 +0.6 5,919,543 + Pf6N2E2_5132 0.85 -1.2 5,919,543 + Pf6N2E2_5132 0.85 -0.1 5,919,544 - Pf6N2E2_5132 0.85 -0.3 5,919,544 - Pf6N2E2_5132 0.85 +0.8 5,919,724 + +0.4 5,919,724 + -1.1 5,919,724 + +0.5 5,919,724 + +0.1 5,919,743 - -0.6 5,919,809 + +0.7 5,919,819 + -0.1 5,919,820 - +0.7 5,919,820 - -1.4 5,919,933 + Pf6N2E2_5133 0.73 -0.7 5,919,933 + Pf6N2E2_5133 0.73 -0.6 5,919,934 - Pf6N2E2_5133 0.74 -0.6 5,919,979 + -1.7 5,919,980 - -0.3 5,919,980 - +1.6 5,919,980 - +1.6 5,919,980 - +1.2 5,920,020 + +0.7 5,920,055 - +0.0 5,920,117 - Pf6N2E2_5134 0.19 -0.2 5,920,117 - Pf6N2E2_5134 0.19 +0.0 5,920,163 + Pf6N2E2_5134 0.30 +1.6 5,920,164 - Pf6N2E2_5134 0.30 +0.4 5,920,164 - Pf6N2E2_5134 0.30 -0.0 5,920,695 + Pf6N2E2_5135 0.22 +1.2 5,920,696 - Pf6N2E2_5135 0.22 -0.9 5,920,800 + Pf6N2E2_5135 0.39 -0.6 5,920,801 - Pf6N2E2_5135 0.39 -0.4 5,920,887 - Pf6N2E2_5135 0.53 +0.5 5,920,887 - Pf6N2E2_5135 0.53 -0.3
Or see this region's nucleotide sequence