Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5107

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5105 and Pf6N2E2_5106 are separated by 170 nucleotidesPf6N2E2_5106 and Pf6N2E2_5107 are separated by 254 nucleotidesPf6N2E2_5107 and Pf6N2E2_5108 are separated by 267 nucleotides Pf6N2E2_5105 - hypothetical protein, at 5,886,660 to 5,888,699 _5105 Pf6N2E2_5106 - SSU ribosomal protein S20p, at 5,888,870 to 5,889,148 _5106 Pf6N2E2_5107 - Proposed peptidoglycan lipid II flippase MurJ, at 5,889,403 to 5,890,941 _5107 Pf6N2E2_5108 - Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2), at 5,891,209 to 5,892,009 _5108 Position (kb) 5889 5890 5891Strain fitness (log2 ratio) -2 -1 0 1at 5888.421 kb on + strand, within Pf6N2E2_5105at 5888.421 kb on + strand, within Pf6N2E2_5105at 5888.422 kb on - strand, within Pf6N2E2_5105at 5888.422 kb on - strand, within Pf6N2E2_5105at 5888.422 kb on - strand, within Pf6N2E2_5105at 5888.425 kb on - strand, within Pf6N2E2_5105at 5888.425 kb on - strand, within Pf6N2E2_5105at 5888.445 kb on + strand, within Pf6N2E2_5105at 5888.445 kb on + strand, within Pf6N2E2_5105at 5888.446 kb on - strand, within Pf6N2E2_5105at 5888.496 kb on + strandat 5888.496 kb on + strandat 5888.496 kb on + strandat 5888.497 kb on - strandat 5888.497 kb on - strandat 5888.497 kb on - strandat 5888.505 kb on + strandat 5888.505 kb on + strandat 5888.511 kb on + strandat 5888.538 kb on + strandat 5888.538 kb on + strandat 5888.538 kb on + strandat 5888.538 kb on + strandat 5888.538 kb on + strandat 5888.539 kb on - strandat 5888.539 kb on - strandat 5888.539 kb on - strandat 5888.541 kb on + strandat 5888.541 kb on + strandat 5888.541 kb on + strandat 5888.541 kb on + strandat 5888.542 kb on - strandat 5888.542 kb on - strandat 5888.542 kb on - strandat 5888.542 kb on - strandat 5888.544 kb on + strandat 5888.544 kb on + strandat 5888.544 kb on + strandat 5888.545 kb on - strandat 5888.596 kb on + strandat 5888.596 kb on + strandat 5888.596 kb on + strandat 5888.596 kb on + strandat 5888.607 kb on + strandat 5888.607 kb on + strandat 5888.607 kb on + strandat 5888.607 kb on + strandat 5888.608 kb on - strandat 5888.608 kb on - strandat 5888.608 kb on - strandat 5888.616 kb on + strandat 5888.616 kb on + strandat 5888.616 kb on + strandat 5888.698 kb on - strandat 5888.698 kb on - strandat 5888.734 kb on + strandat 5888.734 kb on + strandat 5888.734 kb on + strandat 5888.734 kb on + strandat 5888.735 kb on - strandat 5888.795 kb on + strandat 5888.795 kb on + strandat 5888.795 kb on + strandat 5888.796 kb on - strandat 5888.796 kb on - strandat 5889.344 kb on + strandat 5889.393 kb on + strandat 5889.393 kb on + strandat 5891.037 kb on + strandat 5891.037 kb on + strandat 5891.052 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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5,888,421 + Pf6N2E2_5105 0.86 +0.5
5,888,421 + Pf6N2E2_5105 0.86 -0.9
5,888,422 - Pf6N2E2_5105 0.86 -0.6
5,888,422 - Pf6N2E2_5105 0.86 +0.1
5,888,422 - Pf6N2E2_5105 0.86 -0.5
5,888,425 - Pf6N2E2_5105 0.87 -1.6
5,888,425 - Pf6N2E2_5105 0.87 -2.0
5,888,445 + Pf6N2E2_5105 0.88 -2.1
5,888,445 + Pf6N2E2_5105 0.88 -0.8
5,888,446 - Pf6N2E2_5105 0.88 +1.2
5,888,496 + -0.4
5,888,496 + +0.1
5,888,496 + -1.7
5,888,497 - +1.4
5,888,497 - +0.8
5,888,497 - -0.6
5,888,505 + +0.0
5,888,505 + +0.7
5,888,511 + -0.1
5,888,538 + +1.1
5,888,538 + +1.0
5,888,538 + -0.2
5,888,538 + +0.7
5,888,538 + -1.4
5,888,539 - +0.4
5,888,539 - -1.7
5,888,539 - +0.3
5,888,541 + +0.3
5,888,541 + +0.5
5,888,541 + +0.8
5,888,541 + +0.4
5,888,542 - -0.3
5,888,542 - +0.6
5,888,542 - +0.7
5,888,542 - -0.0
5,888,544 + -1.9
5,888,544 + +0.6
5,888,544 + +1.0
5,888,545 - +0.0
5,888,596 + +0.4
5,888,596 + +1.3
5,888,596 + -0.7
5,888,596 + -0.8
5,888,607 + +0.3
5,888,607 + +0.5
5,888,607 + -0.5
5,888,607 + -0.6
5,888,608 - -0.3
5,888,608 - +1.2
5,888,608 - -0.5
5,888,616 + -1.1
5,888,616 + +0.6
5,888,616 + +0.7
5,888,698 - +0.1
5,888,698 - -0.1
5,888,734 + -0.3
5,888,734 + -0.2
5,888,734 + +0.6
5,888,734 + +1.5
5,888,735 - +0.5
5,888,795 + +0.6
5,888,795 + +1.1
5,888,795 + +0.4
5,888,796 - -0.6
5,888,796 - +0.5
5,889,344 + +0.4
5,889,393 + -1.8
5,889,393 + -0.8
5,891,037 + -1.5
5,891,037 + +0.6
5,891,052 + -0.2

Or see this region's nucleotide sequence