Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5086

Experiment: Phosphomycin 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5085 and Pf6N2E2_5086 are separated by 401 nucleotidesPf6N2E2_5086 and Pf6N2E2_5087 are separated by 230 nucleotidesPf6N2E2_5087 and Pf6N2E2_5088 are separated by 70 nucleotides Pf6N2E2_5085 - Lanthionine biosynthesis protein LanM, at 5,866,264 to 5,869,347 _5085 Pf6N2E2_5086 - hypothetical protein, at 5,869,749 to 5,869,892 _5086 Pf6N2E2_5087 - Transcription elongation factor GreB-related protein, at 5,870,123 to 5,870,614 _5087 Pf6N2E2_5088 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 5,870,685 to 5,871,041 _5088 Position (kb) 5869 5870Strain fitness (log2 ratio) -1 0 1at 5868.827 kb on - strand, within Pf6N2E2_5085at 5868.827 kb on - strand, within Pf6N2E2_5085at 5868.879 kb on + strand, within Pf6N2E2_5085at 5868.887 kb on + strand, within Pf6N2E2_5085at 5868.887 kb on + strand, within Pf6N2E2_5085at 5868.887 kb on + strand, within Pf6N2E2_5085at 5868.888 kb on - strand, within Pf6N2E2_5085at 5868.935 kb on + strand, within Pf6N2E2_5085at 5868.935 kb on + strand, within Pf6N2E2_5085at 5868.935 kb on + strand, within Pf6N2E2_5085at 5868.936 kb on - strand, within Pf6N2E2_5085at 5869.025 kb on + strand, within Pf6N2E2_5085at 5869.068 kb on + strandat 5869.068 kb on + strandat 5869.131 kb on + strandat 5869.188 kb on + strandat 5869.189 kb on - strandat 5869.190 kb on + strandat 5869.190 kb on + strandat 5869.190 kb on + strandat 5869.191 kb on - strandat 5869.301 kb on + strandat 5869.308 kb on - strandat 5869.353 kb on - strandat 5869.389 kb on + strandat 5869.398 kb on - strandat 5869.398 kb on - strandat 5869.398 kb on - strandat 5869.433 kb on + strandat 5869.459 kb on - strandat 5869.669 kb on + strandat 5869.670 kb on - strandat 5869.709 kb on + strandat 5869.876 kb on - strand, within Pf6N2E2_5086at 5869.992 kb on - strandat 5870.012 kb on - strandat 5870.038 kb on - strandat 5870.096 kb on - strandat 5870.096 kb on - strandat 5870.529 kb on + strand, within Pf6N2E2_5087at 5870.529 kb on + strand, within Pf6N2E2_5087at 5870.529 kb on + strand, within Pf6N2E2_5087at 5870.529 kb on + strand, within Pf6N2E2_5087at 5870.530 kb on - strand, within Pf6N2E2_5087at 5870.530 kb on - strand, within Pf6N2E2_5087at 5870.530 kb on - strand, within Pf6N2E2_5087at 5870.628 kb on - strandat 5870.686 kb on + strandat 5870.687 kb on - strandat 5870.857 kb on + strand, within Pf6N2E2_5088at 5870.858 kb on - strand, within Pf6N2E2_5088

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
remove
5,868,827 - Pf6N2E2_5085 0.83 +1.2
5,868,827 - Pf6N2E2_5085 0.83 +1.0
5,868,879 + Pf6N2E2_5085 0.85 -0.9
5,868,887 + Pf6N2E2_5085 0.85 +0.6
5,868,887 + Pf6N2E2_5085 0.85 +0.4
5,868,887 + Pf6N2E2_5085 0.85 -0.0
5,868,888 - Pf6N2E2_5085 0.85 +0.7
5,868,935 + Pf6N2E2_5085 0.87 +0.8
5,868,935 + Pf6N2E2_5085 0.87 +0.7
5,868,935 + Pf6N2E2_5085 0.87 -0.7
5,868,936 - Pf6N2E2_5085 0.87 +0.1
5,869,025 + Pf6N2E2_5085 0.90 +0.3
5,869,068 + -0.1
5,869,068 + +0.3
5,869,131 + +0.5
5,869,188 + -0.1
5,869,189 - -1.2
5,869,190 + +0.8
5,869,190 + -0.3
5,869,190 + +0.6
5,869,191 - +0.6
5,869,301 + +0.2
5,869,308 - +0.8
5,869,353 - +0.4
5,869,389 + -0.8
5,869,398 - -0.8
5,869,398 - -0.7
5,869,398 - +0.2
5,869,433 + +0.8
5,869,459 - -0.4
5,869,669 + +0.1
5,869,670 - +0.8
5,869,709 + +1.7
5,869,876 - Pf6N2E2_5086 0.88 -1.2
5,869,992 - +0.7
5,870,012 - -0.8
5,870,038 - +0.3
5,870,096 - +0.3
5,870,096 - +1.1
5,870,529 + Pf6N2E2_5087 0.83 -0.7
5,870,529 + Pf6N2E2_5087 0.83 +0.9
5,870,529 + Pf6N2E2_5087 0.83 -0.9
5,870,529 + Pf6N2E2_5087 0.83 -1.7
5,870,530 - Pf6N2E2_5087 0.83 +1.2
5,870,530 - Pf6N2E2_5087 0.83 -1.0
5,870,530 - Pf6N2E2_5087 0.83 -0.5
5,870,628 - +0.9
5,870,686 + -0.1
5,870,687 - +0.2
5,870,857 + Pf6N2E2_5088 0.48 -0.2
5,870,858 - Pf6N2E2_5088 0.48 -1.2

Or see this region's nucleotide sequence