Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5085 and Pf6N2E2_5086 are separated by 401 nucleotides Pf6N2E2_5086 and Pf6N2E2_5087 are separated by 230 nucleotides Pf6N2E2_5087 and Pf6N2E2_5088 are separated by 70 nucleotides
Pf6N2E2_5085 - Lanthionine biosynthesis protein LanM, at 5,866,264 to 5,869,347
_5085
Pf6N2E2_5086 - hypothetical protein, at 5,869,749 to 5,869,892
_5086
Pf6N2E2_5087 - Transcription elongation factor GreB-related protein, at 5,870,123 to 5,870,614
_5087
Pf6N2E2_5088 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 5,870,685 to 5,871,041
_5088
Position (kb)
5869
5870 Strain fitness (log2 ratio)
-1
0
1 at 5868.827 kb on - strand, within Pf6N2E2_5085 at 5868.827 kb on - strand, within Pf6N2E2_5085 at 5868.879 kb on + strand, within Pf6N2E2_5085 at 5868.887 kb on + strand, within Pf6N2E2_5085 at 5868.887 kb on + strand, within Pf6N2E2_5085 at 5868.887 kb on + strand, within Pf6N2E2_5085 at 5868.888 kb on - strand, within Pf6N2E2_5085 at 5868.935 kb on + strand, within Pf6N2E2_5085 at 5868.935 kb on + strand, within Pf6N2E2_5085 at 5868.935 kb on + strand, within Pf6N2E2_5085 at 5868.936 kb on - strand, within Pf6N2E2_5085 at 5869.025 kb on + strand, within Pf6N2E2_5085 at 5869.068 kb on + strand at 5869.068 kb on + strand at 5869.131 kb on + strand at 5869.188 kb on + strand at 5869.189 kb on - strand at 5869.190 kb on + strand at 5869.190 kb on + strand at 5869.190 kb on + strand at 5869.191 kb on - strand at 5869.301 kb on + strand at 5869.308 kb on - strand at 5869.353 kb on - strand at 5869.389 kb on + strand at 5869.398 kb on - strand at 5869.398 kb on - strand at 5869.398 kb on - strand at 5869.433 kb on + strand at 5869.459 kb on - strand at 5869.669 kb on + strand at 5869.670 kb on - strand at 5869.709 kb on + strand at 5869.876 kb on - strand, within Pf6N2E2_5086 at 5869.992 kb on - strand at 5870.012 kb on - strand at 5870.038 kb on - strand at 5870.096 kb on - strand at 5870.096 kb on - strand at 5870.529 kb on + strand, within Pf6N2E2_5087 at 5870.529 kb on + strand, within Pf6N2E2_5087 at 5870.529 kb on + strand, within Pf6N2E2_5087 at 5870.529 kb on + strand, within Pf6N2E2_5087 at 5870.530 kb on - strand, within Pf6N2E2_5087 at 5870.530 kb on - strand, within Pf6N2E2_5087 at 5870.530 kb on - strand, within Pf6N2E2_5087 at 5870.628 kb on - strand at 5870.686 kb on + strand at 5870.687 kb on - strand at 5870.857 kb on + strand, within Pf6N2E2_5088 at 5870.858 kb on - strand, within Pf6N2E2_5088
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 5,868,827 - Pf6N2E2_5085 0.83 +1.2 5,868,827 - Pf6N2E2_5085 0.83 +1.0 5,868,879 + Pf6N2E2_5085 0.85 -0.9 5,868,887 + Pf6N2E2_5085 0.85 +0.6 5,868,887 + Pf6N2E2_5085 0.85 +0.4 5,868,887 + Pf6N2E2_5085 0.85 -0.0 5,868,888 - Pf6N2E2_5085 0.85 +0.7 5,868,935 + Pf6N2E2_5085 0.87 +0.8 5,868,935 + Pf6N2E2_5085 0.87 +0.7 5,868,935 + Pf6N2E2_5085 0.87 -0.7 5,868,936 - Pf6N2E2_5085 0.87 +0.1 5,869,025 + Pf6N2E2_5085 0.90 +0.3 5,869,068 + -0.1 5,869,068 + +0.3 5,869,131 + +0.5 5,869,188 + -0.1 5,869,189 - -1.2 5,869,190 + +0.8 5,869,190 + -0.3 5,869,190 + +0.6 5,869,191 - +0.6 5,869,301 + +0.2 5,869,308 - +0.8 5,869,353 - +0.4 5,869,389 + -0.8 5,869,398 - -0.8 5,869,398 - -0.7 5,869,398 - +0.2 5,869,433 + +0.8 5,869,459 - -0.4 5,869,669 + +0.1 5,869,670 - +0.8 5,869,709 + +1.7 5,869,876 - Pf6N2E2_5086 0.88 -1.2 5,869,992 - +0.7 5,870,012 - -0.8 5,870,038 - +0.3 5,870,096 - +0.3 5,870,096 - +1.1 5,870,529 + Pf6N2E2_5087 0.83 -0.7 5,870,529 + Pf6N2E2_5087 0.83 +0.9 5,870,529 + Pf6N2E2_5087 0.83 -0.9 5,870,529 + Pf6N2E2_5087 0.83 -1.7 5,870,530 - Pf6N2E2_5087 0.83 +1.2 5,870,530 - Pf6N2E2_5087 0.83 -1.0 5,870,530 - Pf6N2E2_5087 0.83 -0.5 5,870,628 - +0.9 5,870,686 + -0.1 5,870,687 - +0.2 5,870,857 + Pf6N2E2_5088 0.48 -0.2 5,870,858 - Pf6N2E2_5088 0.48 -1.2
Or see this region's nucleotide sequence