Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5064

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5063 and Pf6N2E2_5064 overlap by 4 nucleotidesPf6N2E2_5064 and Pf6N2E2_5065 are separated by 204 nucleotidesPf6N2E2_5065 and Pf6N2E2_5066 are separated by 78 nucleotides Pf6N2E2_5063 - tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35), at 5,838,015 to 5,839,094 _5063 Pf6N2E2_5064 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 5,839,091 to 5,840,386 _5064 Pf6N2E2_5065 - FIG00960037: hypothetical protein, at 5,840,591 to 5,841,046 _5065 Pf6N2E2_5066 - DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31, at 5,841,125 to 5,841,691 _5066 Position (kb) 5839 5840 5841Strain fitness (log2 ratio) -2 -1 0 1 2at 5838.154 kb on + strand, within Pf6N2E2_5063at 5838.154 kb on + strand, within Pf6N2E2_5063at 5838.154 kb on + strand, within Pf6N2E2_5063at 5838.154 kb on + strand, within Pf6N2E2_5063at 5838.155 kb on - strand, within Pf6N2E2_5063at 5838.155 kb on - strand, within Pf6N2E2_5063at 5838.155 kb on - strand, within Pf6N2E2_5063at 5838.155 kb on - strand, within Pf6N2E2_5063at 5838.464 kb on - strand, within Pf6N2E2_5063at 5838.464 kb on - strand, within Pf6N2E2_5063at 5838.464 kb on - strand, within Pf6N2E2_5063at 5838.506 kb on - strand, within Pf6N2E2_5063at 5838.584 kb on + strand, within Pf6N2E2_5063at 5838.584 kb on + strand, within Pf6N2E2_5063at 5838.585 kb on - strand, within Pf6N2E2_5063at 5838.616 kb on + strand, within Pf6N2E2_5063at 5838.616 kb on + strand, within Pf6N2E2_5063at 5838.616 kb on + strand, within Pf6N2E2_5063at 5838.616 kb on + strand, within Pf6N2E2_5063at 5838.617 kb on - strand, within Pf6N2E2_5063at 5838.617 kb on - strand, within Pf6N2E2_5063at 5838.617 kb on - strand, within Pf6N2E2_5063at 5838.617 kb on - strand, within Pf6N2E2_5063at 5838.617 kb on - strand, within Pf6N2E2_5063at 5838.617 kb on - strand, within Pf6N2E2_5063at 5838.617 kb on - strand, within Pf6N2E2_5063at 5838.730 kb on + strand, within Pf6N2E2_5063at 5838.730 kb on + strand, within Pf6N2E2_5063at 5838.730 kb on + strand, within Pf6N2E2_5063at 5838.731 kb on - strand, within Pf6N2E2_5063at 5838.923 kb on - strand, within Pf6N2E2_5063at 5839.072 kb on + strandat 5839.072 kb on + strandat 5839.072 kb on + strandat 5839.233 kb on + strand, within Pf6N2E2_5064at 5839.233 kb on + strand, within Pf6N2E2_5064at 5839.234 kb on - strand, within Pf6N2E2_5064at 5839.479 kb on + strand, within Pf6N2E2_5064at 5839.479 kb on + strand, within Pf6N2E2_5064at 5839.479 kb on + strand, within Pf6N2E2_5064at 5839.479 kb on + strand, within Pf6N2E2_5064at 5839.479 kb on + strand, within Pf6N2E2_5064at 5839.480 kb on - strand, within Pf6N2E2_5064at 5839.665 kb on - strand, within Pf6N2E2_5064at 5840.101 kb on + strand, within Pf6N2E2_5064at 5840.101 kb on + strand, within Pf6N2E2_5064at 5840.102 kb on - strand, within Pf6N2E2_5064at 5840.127 kb on + strand, within Pf6N2E2_5064at 5840.127 kb on + strand, within Pf6N2E2_5064at 5840.127 kb on + strand, within Pf6N2E2_5064at 5840.128 kb on - strand, within Pf6N2E2_5064at 5840.128 kb on - strand, within Pf6N2E2_5064at 5840.128 kb on - strand, within Pf6N2E2_5064at 5840.128 kb on - strand, within Pf6N2E2_5064at 5840.128 kb on - strand, within Pf6N2E2_5064at 5840.296 kb on - strandat 5840.296 kb on - strandat 5840.296 kb on - strandat 5840.296 kb on - strandat 5840.422 kb on + strandat 5840.422 kb on + strandat 5840.422 kb on + strandat 5840.422 kb on + strandat 5840.422 kb on + strandat 5840.423 kb on - strandat 5840.499 kb on + strandat 5840.500 kb on - strandat 5840.500 kb on - strandat 5840.511 kb on - strandat 5840.564 kb on + strandat 5840.565 kb on - strandat 5840.590 kb on + strandat 5840.590 kb on + strandat 5840.590 kb on + strandat 5840.591 kb on - strandat 5840.591 kb on - strandat 5840.591 kb on - strandat 5840.591 kb on - strandat 5840.591 kb on - strandat 5840.591 kb on - strandat 5840.591 kb on - strandat 5840.591 kb on - strandat 5840.594 kb on + strandat 5840.594 kb on + strandat 5840.594 kb on + strandat 5840.594 kb on + strandat 5840.594 kb on + strandat 5840.594 kb on + strandat 5840.594 kb on + strandat 5840.594 kb on + strandat 5840.594 kb on + strandat 5840.595 kb on - strandat 5840.595 kb on - strandat 5840.595 kb on - strandat 5840.595 kb on - strandat 5840.595 kb on - strandat 5840.605 kb on + strandat 5840.605 kb on + strandat 5840.606 kb on - strandat 5840.789 kb on - strand, within Pf6N2E2_5065at 5840.798 kb on + strand, within Pf6N2E2_5065at 5840.798 kb on + strand, within Pf6N2E2_5065at 5840.798 kb on + strand, within Pf6N2E2_5065at 5840.799 kb on - strand, within Pf6N2E2_5065at 5840.799 kb on - strand, within Pf6N2E2_5065at 5840.799 kb on - strand, within Pf6N2E2_5065at 5840.885 kb on + strand, within Pf6N2E2_5065at 5840.936 kb on + strand, within Pf6N2E2_5065at 5840.936 kb on + strand, within Pf6N2E2_5065at 5840.936 kb on + strand, within Pf6N2E2_5065at 5840.942 kb on + strand, within Pf6N2E2_5065at 5840.942 kb on + strand, within Pf6N2E2_5065at 5840.942 kb on + strand, within Pf6N2E2_5065at 5840.942 kb on + strand, within Pf6N2E2_5065at 5840.942 kb on + strand, within Pf6N2E2_5065at 5840.943 kb on - strand, within Pf6N2E2_5065at 5840.943 kb on - strand, within Pf6N2E2_5065at 5841.035 kb on + strandat 5841.036 kb on - strandat 5841.036 kb on - strandat 5841.040 kb on + strandat 5841.040 kb on + strandat 5841.040 kb on + strandat 5841.040 kb on + strandat 5841.040 kb on + strandat 5841.041 kb on - strandat 5841.090 kb on - strandat 5841.090 kb on - strandat 5841.160 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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5,838,154 + Pf6N2E2_5063 0.13 +0.5
5,838,154 + Pf6N2E2_5063 0.13 -0.5
5,838,154 + Pf6N2E2_5063 0.13 +2.5
5,838,154 + Pf6N2E2_5063 0.13 +1.2
5,838,155 - Pf6N2E2_5063 0.13 +0.9
5,838,155 - Pf6N2E2_5063 0.13 -0.3
5,838,155 - Pf6N2E2_5063 0.13 -1.2
5,838,155 - Pf6N2E2_5063 0.13 -0.0
5,838,464 - Pf6N2E2_5063 0.42 +1.2
5,838,464 - Pf6N2E2_5063 0.42 +0.3
5,838,464 - Pf6N2E2_5063 0.42 +0.7
5,838,506 - Pf6N2E2_5063 0.45 +0.2
5,838,584 + Pf6N2E2_5063 0.53 +0.9
5,838,584 + Pf6N2E2_5063 0.53 +1.7
5,838,585 - Pf6N2E2_5063 0.53 -0.1
5,838,616 + Pf6N2E2_5063 0.56 +1.2
5,838,616 + Pf6N2E2_5063 0.56 +1.1
5,838,616 + Pf6N2E2_5063 0.56 +1.7
5,838,616 + Pf6N2E2_5063 0.56 +0.2
5,838,617 - Pf6N2E2_5063 0.56 +1.5
5,838,617 - Pf6N2E2_5063 0.56 +0.2
5,838,617 - Pf6N2E2_5063 0.56 +0.1
5,838,617 - Pf6N2E2_5063 0.56 +0.5
5,838,617 - Pf6N2E2_5063 0.56 +1.5
5,838,617 - Pf6N2E2_5063 0.56 +0.9
5,838,617 - Pf6N2E2_5063 0.56 +1.6
5,838,730 + Pf6N2E2_5063 0.66 +1.2
5,838,730 + Pf6N2E2_5063 0.66 +0.5
5,838,730 + Pf6N2E2_5063 0.66 +1.6
5,838,731 - Pf6N2E2_5063 0.66 +0.2
5,838,923 - Pf6N2E2_5063 0.84 +0.3
5,839,072 + +0.3
5,839,072 + +1.0
5,839,072 + +1.3
5,839,233 + Pf6N2E2_5064 0.11 +2.7
5,839,233 + Pf6N2E2_5064 0.11 +0.8
5,839,234 - Pf6N2E2_5064 0.11 +1.6
5,839,479 + Pf6N2E2_5064 0.30 +1.0
5,839,479 + Pf6N2E2_5064 0.30 +2.1
5,839,479 + Pf6N2E2_5064 0.30 +0.3
5,839,479 + Pf6N2E2_5064 0.30 +1.3
5,839,479 + Pf6N2E2_5064 0.30 +2.0
5,839,480 - Pf6N2E2_5064 0.30 +1.1
5,839,665 - Pf6N2E2_5064 0.44 +1.0
5,840,101 + Pf6N2E2_5064 0.78 +2.2
5,840,101 + Pf6N2E2_5064 0.78 +2.5
5,840,102 - Pf6N2E2_5064 0.78 +1.7
5,840,127 + Pf6N2E2_5064 0.80 +0.6
5,840,127 + Pf6N2E2_5064 0.80 +1.5
5,840,127 + Pf6N2E2_5064 0.80 +1.8
5,840,128 - Pf6N2E2_5064 0.80 +1.1
5,840,128 - Pf6N2E2_5064 0.80 +2.2
5,840,128 - Pf6N2E2_5064 0.80 +1.0
5,840,128 - Pf6N2E2_5064 0.80 -0.8
5,840,128 - Pf6N2E2_5064 0.80 +1.4
5,840,296 - +1.8
5,840,296 - +1.1
5,840,296 - +0.3
5,840,296 - -0.2
5,840,422 + +1.4
5,840,422 + +2.3
5,840,422 + +2.7
5,840,422 + +1.5
5,840,422 + +2.1
5,840,423 - +0.5
5,840,499 + +1.6
5,840,500 - +0.1
5,840,500 - -1.8
5,840,511 - -1.5
5,840,564 + +1.5
5,840,565 - -0.7
5,840,590 + +0.8
5,840,590 + +0.6
5,840,590 + -0.5
5,840,591 - -1.9
5,840,591 - +0.6
5,840,591 - +0.3
5,840,591 - -0.1
5,840,591 - -0.2
5,840,591 - +0.6
5,840,591 - +0.9
5,840,591 - +0.2
5,840,594 + +0.5
5,840,594 + +0.8
5,840,594 + +0.6
5,840,594 + +1.1
5,840,594 + +1.3
5,840,594 + +1.0
5,840,594 + +2.1
5,840,594 + -0.5
5,840,594 + -1.3
5,840,595 - -0.6
5,840,595 - -0.6
5,840,595 - +0.1
5,840,595 - -0.2
5,840,595 - +1.3
5,840,605 + +1.1
5,840,605 + -0.1
5,840,606 - +0.1
5,840,789 - Pf6N2E2_5065 0.43 +0.3
5,840,798 + Pf6N2E2_5065 0.45 -0.7
5,840,798 + Pf6N2E2_5065 0.45 -0.3
5,840,798 + Pf6N2E2_5065 0.45 -1.6
5,840,799 - Pf6N2E2_5065 0.46 +0.1
5,840,799 - Pf6N2E2_5065 0.46 +1.5
5,840,799 - Pf6N2E2_5065 0.46 +0.1
5,840,885 + Pf6N2E2_5065 0.64 -1.3
5,840,936 + Pf6N2E2_5065 0.76 -0.1
5,840,936 + Pf6N2E2_5065 0.76 +0.8
5,840,936 + Pf6N2E2_5065 0.76 -0.0
5,840,942 + Pf6N2E2_5065 0.77 -0.6
5,840,942 + Pf6N2E2_5065 0.77 +0.1
5,840,942 + Pf6N2E2_5065 0.77 -0.2
5,840,942 + Pf6N2E2_5065 0.77 +0.2
5,840,942 + Pf6N2E2_5065 0.77 +0.7
5,840,943 - Pf6N2E2_5065 0.77 -1.4
5,840,943 - Pf6N2E2_5065 0.77 -0.6
5,841,035 + -0.1
5,841,036 - +0.1
5,841,036 - +0.6
5,841,040 + -2.2
5,841,040 + +0.3
5,841,040 + -0.0
5,841,040 + -2.7
5,841,040 + -0.5
5,841,041 - -0.7
5,841,090 - +0.3
5,841,090 - -0.8
5,841,160 + +0.3

Or see this region's nucleotide sequence