Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5013 and Pf6N2E2_5014 are separated by 168 nucleotides Pf6N2E2_5014 and Pf6N2E2_5015 are separated by 27 nucleotides Pf6N2E2_5015 and Pf6N2E2_5016 are separated by 40 nucleotides
Pf6N2E2_5013 - Putative membrane protein, at 5,779,651 to 5,780,412
_5013
Pf6N2E2_5014 - Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE, at 5,780,581 to 5,782,104
_5014
Pf6N2E2_5015 - Magnesium and cobalt efflux protein CorC, at 5,782,132 to 5,782,971
_5015
Pf6N2E2_5016 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 5,783,012 to 5,783,470
_5016
Position (kb) 5780
5781
5782
5783 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5779.623 kb on - strand at 5779.637 kb on + strand at 5779.637 kb on + strand at 5779.637 kb on + strand at 5779.637 kb on + strand at 5779.637 kb on + strand at 5779.637 kb on + strand at 5779.637 kb on + strand at 5779.637 kb on + strand at 5779.637 kb on + strand at 5779.637 kb on + strand at 5779.637 kb on + strand at 5779.637 kb on + strand at 5779.638 kb on - strand at 5779.638 kb on - strand at 5779.638 kb on - strand at 5779.638 kb on - strand at 5779.638 kb on - strand at 5779.638 kb on - strand at 5779.638 kb on - strand at 5779.638 kb on - strand at 5779.664 kb on - strand at 5779.682 kb on + strand at 5779.682 kb on + strand at 5779.682 kb on + strand at 5779.682 kb on + strand at 5779.683 kb on - strand at 5779.683 kb on - strand at 5779.683 kb on - strand at 5779.683 kb on - strand at 5779.956 kb on + strand, within Pf6N2E2_5013 at 5779.956 kb on + strand, within Pf6N2E2_5013 at 5780.044 kb on + strand, within Pf6N2E2_5013 at 5780.130 kb on + strand, within Pf6N2E2_5013 at 5780.404 kb on + strand at 5780.405 kb on - strand at 5780.434 kb on + strand at 5780.453 kb on + strand at 5780.548 kb on + strand at 5780.549 kb on - strand at 5780.549 kb on - strand at 5781.087 kb on - strand, within Pf6N2E2_5014 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 5,779,623 - -0.1 5,779,637 + +0.5 5,779,637 + +0.3 5,779,637 + +0.5 5,779,637 + +1.7 5,779,637 + +0.5 5,779,637 + +0.3 5,779,637 + -1.5 5,779,637 + -0.9 5,779,637 + +0.4 5,779,637 + -0.1 5,779,637 + +0.4 5,779,637 + +0.1 5,779,638 - +0.3 5,779,638 - +0.7 5,779,638 - -0.8 5,779,638 - +0.2 5,779,638 - +0.1 5,779,638 - +0.0 5,779,638 - -0.1 5,779,638 - +0.4 5,779,664 - +0.1 5,779,682 + +0.8 5,779,682 + -1.1 5,779,682 + +0.6 5,779,682 + +0.2 5,779,683 - +1.3 5,779,683 - -0.2 5,779,683 - -1.0 5,779,683 - +1.1 5,779,956 + Pf6N2E2_5013 0.40 -0.1 5,779,956 + Pf6N2E2_5013 0.40 +0.4 5,780,044 + Pf6N2E2_5013 0.52 +0.1 5,780,130 + Pf6N2E2_5013 0.63 +0.8 5,780,404 + +0.2 5,780,405 - +0.7 5,780,434 + +0.3 5,780,453 + +0.3 5,780,548 + +0.1 5,780,549 - -0.4 5,780,549 - -0.6 5,781,087 - Pf6N2E2_5014 0.33 -3.2 5,782,380 - Pf6N2E2_5015 0.30 +0.1 5,782,380 - Pf6N2E2_5015 0.30 -0.6 5,782,380 - Pf6N2E2_5015 0.30 -0.2 5,782,380 - Pf6N2E2_5015 0.30 +0.3 5,782,380 - Pf6N2E2_5015 0.30 +0.9 5,782,380 - Pf6N2E2_5015 0.30 +1.4 5,782,380 - Pf6N2E2_5015 0.30 -0.2 5,782,380 - Pf6N2E2_5015 0.30 +1.0 5,782,380 - Pf6N2E2_5015 0.30 -0.5 5,782,380 - Pf6N2E2_5015 0.30 +0.6 5,783,011 - +0.8 5,783,011 - +0.2 5,783,011 - +1.2 5,783,011 - +0.4 5,783,011 - +0.2 5,783,011 - +0.6 5,783,011 - +1.7 5,783,011 - -0.3
Or see this region's nucleotide sequence