Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4665

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4664 and Pf6N2E2_4665 are separated by 282 nucleotidesPf6N2E2_4665 and Pf6N2E2_4666 are separated by 323 nucleotides Pf6N2E2_4664 - Alginate lyase precursor (EC 4.2.2.3), at 5,393,555 to 5,394,223 _4664 Pf6N2E2_4665 - Alginate lyase precursor (EC 4.2.2.3), at 5,394,506 to 5,395,171 _4665 Pf6N2E2_4666 - Sensory box/GGDEF family protein, at 5,395,495 to 5,397,618 _4666 Position (kb) 5394 5395 5396Strain fitness (log2 ratio) -2 -1 0 1 2at 5393.613 kb on + strandat 5393.614 kb on - strandat 5393.634 kb on + strand, within Pf6N2E2_4664at 5393.634 kb on + strand, within Pf6N2E2_4664at 5393.634 kb on + strand, within Pf6N2E2_4664at 5393.634 kb on + strand, within Pf6N2E2_4664at 5393.634 kb on + strand, within Pf6N2E2_4664at 5393.634 kb on + strand, within Pf6N2E2_4664at 5393.634 kb on + strand, within Pf6N2E2_4664at 5393.634 kb on + strand, within Pf6N2E2_4664at 5393.634 kb on + strand, within Pf6N2E2_4664at 5393.635 kb on - strand, within Pf6N2E2_4664at 5393.635 kb on - strand, within Pf6N2E2_4664at 5393.635 kb on - strand, within Pf6N2E2_4664at 5393.635 kb on - strand, within Pf6N2E2_4664at 5393.674 kb on + strand, within Pf6N2E2_4664at 5393.675 kb on - strand, within Pf6N2E2_4664at 5393.700 kb on + strand, within Pf6N2E2_4664at 5393.700 kb on + strand, within Pf6N2E2_4664at 5393.751 kb on + strand, within Pf6N2E2_4664at 5393.751 kb on + strand, within Pf6N2E2_4664at 5393.751 kb on + strand, within Pf6N2E2_4664at 5393.752 kb on - strand, within Pf6N2E2_4664at 5393.752 kb on - strand, within Pf6N2E2_4664at 5393.752 kb on - strand, within Pf6N2E2_4664at 5393.791 kb on + strand, within Pf6N2E2_4664at 5393.791 kb on + strand, within Pf6N2E2_4664at 5393.792 kb on - strand, within Pf6N2E2_4664at 5393.792 kb on - strand, within Pf6N2E2_4664at 5393.859 kb on + strand, within Pf6N2E2_4664at 5393.860 kb on - strand, within Pf6N2E2_4664at 5393.860 kb on - strand, within Pf6N2E2_4664at 5393.860 kb on - strand, within Pf6N2E2_4664at 5393.860 kb on - strand, within Pf6N2E2_4664at 5393.860 kb on - strand, within Pf6N2E2_4664at 5393.869 kb on - strand, within Pf6N2E2_4664at 5393.875 kb on - strand, within Pf6N2E2_4664at 5393.949 kb on - strand, within Pf6N2E2_4664at 5394.028 kb on - strand, within Pf6N2E2_4664at 5394.055 kb on - strand, within Pf6N2E2_4664at 5394.126 kb on + strand, within Pf6N2E2_4664at 5394.126 kb on + strand, within Pf6N2E2_4664at 5394.126 kb on + strand, within Pf6N2E2_4664at 5394.126 kb on + strand, within Pf6N2E2_4664at 5394.126 kb on + strand, within Pf6N2E2_4664at 5394.126 kb on + strand, within Pf6N2E2_4664at 5394.127 kb on - strand, within Pf6N2E2_4664at 5394.127 kb on - strand, within Pf6N2E2_4664at 5394.127 kb on - strand, within Pf6N2E2_4664at 5394.127 kb on - strand, within Pf6N2E2_4664at 5394.127 kb on - strand, within Pf6N2E2_4664at 5394.247 kb on + strandat 5394.248 kb on - strandat 5394.260 kb on + strandat 5394.260 kb on + strandat 5394.261 kb on - strandat 5394.278 kb on + strandat 5394.279 kb on - strandat 5394.387 kb on + strandat 5394.387 kb on + strandat 5394.387 kb on + strandat 5394.387 kb on + strandat 5394.387 kb on + strandat 5394.387 kb on + strandat 5394.387 kb on + strandat 5394.387 kb on + strandat 5394.387 kb on + strandat 5394.387 kb on + strandat 5394.387 kb on + strandat 5394.388 kb on - strandat 5394.388 kb on - strandat 5394.388 kb on - strandat 5394.388 kb on - strandat 5394.388 kb on - strandat 5394.388 kb on - strandat 5394.388 kb on - strandat 5394.388 kb on - strandat 5394.388 kb on - strandat 5394.437 kb on + strandat 5394.437 kb on + strandat 5394.455 kb on + strandat 5394.455 kb on + strandat 5394.507 kb on + strandat 5394.507 kb on + strandat 5394.508 kb on - strandat 5394.508 kb on - strandat 5394.508 kb on - strandat 5394.582 kb on + strand, within Pf6N2E2_4665at 5394.582 kb on + strand, within Pf6N2E2_4665at 5394.583 kb on - strand, within Pf6N2E2_4665at 5394.583 kb on - strand, within Pf6N2E2_4665at 5394.583 kb on - strand, within Pf6N2E2_4665at 5394.600 kb on + strand, within Pf6N2E2_4665at 5394.601 kb on - strand, within Pf6N2E2_4665at 5394.699 kb on + strand, within Pf6N2E2_4665at 5394.700 kb on - strand, within Pf6N2E2_4665at 5394.700 kb on - strand, within Pf6N2E2_4665at 5394.700 kb on - strand, within Pf6N2E2_4665at 5394.700 kb on - strand, within Pf6N2E2_4665at 5394.700 kb on - strand, within Pf6N2E2_4665at 5394.700 kb on - strand, within Pf6N2E2_4665at 5394.814 kb on + strand, within Pf6N2E2_4665at 5394.814 kb on + strand, within Pf6N2E2_4665at 5394.814 kb on + strand, within Pf6N2E2_4665at 5394.814 kb on + strand, within Pf6N2E2_4665at 5394.814 kb on + strand, within Pf6N2E2_4665at 5394.815 kb on - strand, within Pf6N2E2_4665at 5394.815 kb on - strand, within Pf6N2E2_4665at 5394.815 kb on - strand, within Pf6N2E2_4665at 5394.815 kb on - strand, within Pf6N2E2_4665at 5394.815 kb on - strand, within Pf6N2E2_4665at 5394.815 kb on - strand, within Pf6N2E2_4665at 5394.815 kb on - strand, within Pf6N2E2_4665at 5394.815 kb on - strand, within Pf6N2E2_4665at 5394.816 kb on + strand, within Pf6N2E2_4665at 5394.816 kb on + strand, within Pf6N2E2_4665at 5394.817 kb on - strand, within Pf6N2E2_4665at 5394.817 kb on - strand, within Pf6N2E2_4665at 5394.860 kb on - strand, within Pf6N2E2_4665at 5394.929 kb on - strand, within Pf6N2E2_4665at 5394.975 kb on + strand, within Pf6N2E2_4665at 5394.975 kb on + strand, within Pf6N2E2_4665at 5394.976 kb on - strand, within Pf6N2E2_4665at 5394.976 kb on - strand, within Pf6N2E2_4665at 5395.002 kb on + strand, within Pf6N2E2_4665at 5395.002 kb on + strand, within Pf6N2E2_4665at 5395.002 kb on + strand, within Pf6N2E2_4665at 5395.006 kb on + strand, within Pf6N2E2_4665at 5395.006 kb on + strand, within Pf6N2E2_4665at 5395.006 kb on + strand, within Pf6N2E2_4665at 5395.006 kb on + strand, within Pf6N2E2_4665at 5395.006 kb on + strand, within Pf6N2E2_4665at 5395.006 kb on + strand, within Pf6N2E2_4665at 5395.006 kb on + strand, within Pf6N2E2_4665at 5395.006 kb on + strand, within Pf6N2E2_4665at 5395.006 kb on + strand, within Pf6N2E2_4665at 5395.007 kb on - strand, within Pf6N2E2_4665at 5395.007 kb on - strand, within Pf6N2E2_4665at 5395.007 kb on - strand, within Pf6N2E2_4665at 5395.074 kb on + strand, within Pf6N2E2_4665at 5395.117 kb on + strandat 5395.182 kb on + strandat 5395.182 kb on + strandat 5395.182 kb on + strandat 5395.182 kb on + strandat 5395.182 kb on + strandat 5395.182 kb on + strandat 5395.182 kb on + strandat 5395.182 kb on + strandat 5395.182 kb on + strandat 5395.183 kb on - strandat 5395.183 kb on - strandat 5395.183 kb on - strandat 5395.183 kb on - strandat 5395.183 kb on - strandat 5395.183 kb on - strandat 5395.183 kb on - strandat 5395.183 kb on - strandat 5395.225 kb on + strandat 5395.225 kb on + strandat 5395.246 kb on - strandat 5395.401 kb on - strandat 5395.423 kb on + strandat 5395.423 kb on + strandat 5395.423 kb on + strandat 5395.424 kb on - strandat 5395.439 kb on + strandat 5395.439 kb on + strandat 5395.439 kb on + strandat 5395.439 kb on + strandat 5395.439 kb on + strandat 5395.439 kb on + strandat 5395.439 kb on + strandat 5395.440 kb on - strandat 5395.440 kb on - strandat 5395.440 kb on - strandat 5395.440 kb on - strandat 5395.440 kb on - strandat 5395.440 kb on - strandat 5395.440 kb on - strandat 5395.440 kb on - strandat 5395.455 kb on + strandat 5395.455 kb on + strandat 5395.456 kb on - strandat 5395.456 kb on - strandat 5395.459 kb on + strandat 5395.641 kb on + strandat 5395.743 kb on + strand, within Pf6N2E2_4666at 5395.811 kb on - strand, within Pf6N2E2_4666at 5395.811 kb on - strand, within Pf6N2E2_4666at 5395.831 kb on + strand, within Pf6N2E2_4666at 5395.831 kb on + strand, within Pf6N2E2_4666at 5395.831 kb on + strand, within Pf6N2E2_4666at 5395.953 kb on + strand, within Pf6N2E2_4666at 5396.034 kb on + strand, within Pf6N2E2_4666at 5396.034 kb on + strand, within Pf6N2E2_4666at 5396.069 kb on + strand, within Pf6N2E2_4666at 5396.069 kb on + strand, within Pf6N2E2_4666at 5396.069 kb on + strand, within Pf6N2E2_4666at 5396.069 kb on + strand, within Pf6N2E2_4666at 5396.070 kb on - strand, within Pf6N2E2_4666at 5396.070 kb on - strand, within Pf6N2E2_4666at 5396.070 kb on - strand, within Pf6N2E2_4666at 5396.070 kb on - strand, within Pf6N2E2_4666

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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5,393,613 + +0.5
5,393,614 - -1.3
5,393,634 + Pf6N2E2_4664 0.12 -0.1
5,393,634 + Pf6N2E2_4664 0.12 +0.0
5,393,634 + Pf6N2E2_4664 0.12 -0.3
5,393,634 + Pf6N2E2_4664 0.12 +0.3
5,393,634 + Pf6N2E2_4664 0.12 +0.4
5,393,634 + Pf6N2E2_4664 0.12 +0.8
5,393,634 + Pf6N2E2_4664 0.12 +0.5
5,393,634 + Pf6N2E2_4664 0.12 +0.7
5,393,634 + Pf6N2E2_4664 0.12 +1.1
5,393,635 - Pf6N2E2_4664 0.12 +0.6
5,393,635 - Pf6N2E2_4664 0.12 +1.0
5,393,635 - Pf6N2E2_4664 0.12 +1.0
5,393,635 - Pf6N2E2_4664 0.12 +1.4
5,393,674 + Pf6N2E2_4664 0.18 -0.3
5,393,675 - Pf6N2E2_4664 0.18 -0.9
5,393,700 + Pf6N2E2_4664 0.22 -1.7
5,393,700 + Pf6N2E2_4664 0.22 -0.3
5,393,751 + Pf6N2E2_4664 0.29 -0.8
5,393,751 + Pf6N2E2_4664 0.29 -0.2
5,393,751 + Pf6N2E2_4664 0.29 +0.3
5,393,752 - Pf6N2E2_4664 0.29 +1.8
5,393,752 - Pf6N2E2_4664 0.29 +0.7
5,393,752 - Pf6N2E2_4664 0.29 +0.9
5,393,791 + Pf6N2E2_4664 0.35 +1.3
5,393,791 + Pf6N2E2_4664 0.35 -0.8
5,393,792 - Pf6N2E2_4664 0.35 -0.6
5,393,792 - Pf6N2E2_4664 0.35 -1.1
5,393,859 + Pf6N2E2_4664 0.45 +1.1
5,393,860 - Pf6N2E2_4664 0.46 +0.5
5,393,860 - Pf6N2E2_4664 0.46 +0.5
5,393,860 - Pf6N2E2_4664 0.46 +0.4
5,393,860 - Pf6N2E2_4664 0.46 +1.7
5,393,860 - Pf6N2E2_4664 0.46 +0.8
5,393,869 - Pf6N2E2_4664 0.47 -0.0
5,393,875 - Pf6N2E2_4664 0.48 +0.3
5,393,949 - Pf6N2E2_4664 0.59 +0.6
5,394,028 - Pf6N2E2_4664 0.71 +0.2
5,394,055 - Pf6N2E2_4664 0.75 +0.9
5,394,126 + Pf6N2E2_4664 0.85 +1.0
5,394,126 + Pf6N2E2_4664 0.85 +0.4
5,394,126 + Pf6N2E2_4664 0.85 -0.4
5,394,126 + Pf6N2E2_4664 0.85 -1.1
5,394,126 + Pf6N2E2_4664 0.85 +1.2
5,394,126 + Pf6N2E2_4664 0.85 +0.3
5,394,127 - Pf6N2E2_4664 0.86 +0.4
5,394,127 - Pf6N2E2_4664 0.86 +0.6
5,394,127 - Pf6N2E2_4664 0.86 +0.2
5,394,127 - Pf6N2E2_4664 0.86 -0.3
5,394,127 - Pf6N2E2_4664 0.86 -0.2
5,394,247 + -1.2
5,394,248 - +0.4
5,394,260 + -0.1
5,394,260 + +0.5
5,394,261 - -0.2
5,394,278 + +0.4
5,394,279 - -0.2
5,394,387 + +0.7
5,394,387 + +0.6
5,394,387 + -0.4
5,394,387 + +1.3
5,394,387 + -0.2
5,394,387 + +0.7
5,394,387 + +0.9
5,394,387 + +0.7
5,394,387 + +0.8
5,394,387 + +0.2
5,394,387 + -1.8
5,394,388 - -0.7
5,394,388 - -0.6
5,394,388 - -1.5
5,394,388 - +0.4
5,394,388 - -0.9
5,394,388 - -0.9
5,394,388 - +1.1
5,394,388 - +0.0
5,394,388 - -0.3
5,394,437 + +0.3
5,394,437 + +0.3
5,394,455 + -0.1
5,394,455 + +0.6
5,394,507 + +0.2
5,394,507 + -0.3
5,394,508 - +0.6
5,394,508 - +0.9
5,394,508 - -0.5
5,394,582 + Pf6N2E2_4665 0.11 +0.8
5,394,582 + Pf6N2E2_4665 0.11 -0.7
5,394,583 - Pf6N2E2_4665 0.12 +0.2
5,394,583 - Pf6N2E2_4665 0.12 +0.8
5,394,583 - Pf6N2E2_4665 0.12 -1.2
5,394,600 + Pf6N2E2_4665 0.14 +0.0
5,394,601 - Pf6N2E2_4665 0.14 -1.4
5,394,699 + Pf6N2E2_4665 0.29 -0.1
5,394,700 - Pf6N2E2_4665 0.29 -1.7
5,394,700 - Pf6N2E2_4665 0.29 +0.4
5,394,700 - Pf6N2E2_4665 0.29 -1.2
5,394,700 - Pf6N2E2_4665 0.29 +0.5
5,394,700 - Pf6N2E2_4665 0.29 +0.1
5,394,700 - Pf6N2E2_4665 0.29 +0.1
5,394,814 + Pf6N2E2_4665 0.46 -0.9
5,394,814 + Pf6N2E2_4665 0.46 +0.6
5,394,814 + Pf6N2E2_4665 0.46 -0.6
5,394,814 + Pf6N2E2_4665 0.46 +0.1
5,394,814 + Pf6N2E2_4665 0.46 -0.1
5,394,815 - Pf6N2E2_4665 0.46 -2.1
5,394,815 - Pf6N2E2_4665 0.46 +0.2
5,394,815 - Pf6N2E2_4665 0.46 -0.1
5,394,815 - Pf6N2E2_4665 0.46 -1.2
5,394,815 - Pf6N2E2_4665 0.46 +0.2
5,394,815 - Pf6N2E2_4665 0.46 +1.8
5,394,815 - Pf6N2E2_4665 0.46 +0.9
5,394,815 - Pf6N2E2_4665 0.46 -0.9
5,394,816 + Pf6N2E2_4665 0.47 +0.5
5,394,816 + Pf6N2E2_4665 0.47 +0.7
5,394,817 - Pf6N2E2_4665 0.47 -0.5
5,394,817 - Pf6N2E2_4665 0.47 +0.2
5,394,860 - Pf6N2E2_4665 0.53 +1.0
5,394,929 - Pf6N2E2_4665 0.64 -0.2
5,394,975 + Pf6N2E2_4665 0.70 +1.8
5,394,975 + Pf6N2E2_4665 0.70 +0.3
5,394,976 - Pf6N2E2_4665 0.71 +1.0
5,394,976 - Pf6N2E2_4665 0.71 +1.5
5,395,002 + Pf6N2E2_4665 0.74 -0.3
5,395,002 + Pf6N2E2_4665 0.74 +0.0
5,395,002 + Pf6N2E2_4665 0.74 +0.3
5,395,006 + Pf6N2E2_4665 0.75 +0.5
5,395,006 + Pf6N2E2_4665 0.75 +0.6
5,395,006 + Pf6N2E2_4665 0.75 -1.4
5,395,006 + Pf6N2E2_4665 0.75 +0.3
5,395,006 + Pf6N2E2_4665 0.75 -1.1
5,395,006 + Pf6N2E2_4665 0.75 -0.3
5,395,006 + Pf6N2E2_4665 0.75 +0.3
5,395,006 + Pf6N2E2_4665 0.75 +1.2
5,395,006 + Pf6N2E2_4665 0.75 +0.2
5,395,007 - Pf6N2E2_4665 0.75 -0.2
5,395,007 - Pf6N2E2_4665 0.75 -0.3
5,395,007 - Pf6N2E2_4665 0.75 +0.3
5,395,074 + Pf6N2E2_4665 0.85 -0.3
5,395,117 + -0.6
5,395,182 + +0.0
5,395,182 + +1.3
5,395,182 + +0.2
5,395,182 + +1.9
5,395,182 + -0.5
5,395,182 + +1.3
5,395,182 + +1.4
5,395,182 + -1.0
5,395,182 + -0.4
5,395,183 - +0.1
5,395,183 - -0.1
5,395,183 - -0.9
5,395,183 - -0.9
5,395,183 - -0.1
5,395,183 - +0.6
5,395,183 - -0.1
5,395,183 - +0.1
5,395,225 + +1.8
5,395,225 + -0.9
5,395,246 - -2.3
5,395,401 - -0.8
5,395,423 + +0.7
5,395,423 + +1.0
5,395,423 + +0.2
5,395,424 - -2.1
5,395,439 + -0.2
5,395,439 + +1.6
5,395,439 + -0.7
5,395,439 + -0.1
5,395,439 + -2.0
5,395,439 + +0.4
5,395,439 + -0.4
5,395,440 - +0.5
5,395,440 - -1.6
5,395,440 - +0.3
5,395,440 - -0.3
5,395,440 - +0.8
5,395,440 - -1.8
5,395,440 - -0.3
5,395,440 - +1.0
5,395,455 + -0.0
5,395,455 + +0.8
5,395,456 - -2.2
5,395,456 - -0.2
5,395,459 + -0.5
5,395,641 + +1.3
5,395,743 + Pf6N2E2_4666 0.12 -1.1
5,395,811 - Pf6N2E2_4666 0.15 +0.2
5,395,811 - Pf6N2E2_4666 0.15 +1.1
5,395,831 + Pf6N2E2_4666 0.16 -1.0
5,395,831 + Pf6N2E2_4666 0.16 +1.0
5,395,831 + Pf6N2E2_4666 0.16 -1.1
5,395,953 + Pf6N2E2_4666 0.22 +1.2
5,396,034 + Pf6N2E2_4666 0.25 +0.1
5,396,034 + Pf6N2E2_4666 0.25 +0.8
5,396,069 + Pf6N2E2_4666 0.27 +0.9
5,396,069 + Pf6N2E2_4666 0.27 +0.4
5,396,069 + Pf6N2E2_4666 0.27 -0.3
5,396,069 + Pf6N2E2_4666 0.27 +0.9
5,396,070 - Pf6N2E2_4666 0.27 +0.4
5,396,070 - Pf6N2E2_4666 0.27 -0.4
5,396,070 - Pf6N2E2_4666 0.27 +0.6
5,396,070 - Pf6N2E2_4666 0.27 +0.3

Or see this region's nucleotide sequence