Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4603 and Pf6N2E2_4604 are separated by 249 nucleotides Pf6N2E2_4604 and Pf6N2E2_4605 are separated by 123 nucleotides Pf6N2E2_4605 and Pf6N2E2_4606 overlap by 4 nucleotides
Pf6N2E2_4603 - NLP/P60 family protein, at 5,329,106 to 5,329,717
_4603
Pf6N2E2_4604 - FIG00955003: hypothetical protein, at 5,329,967 to 5,330,395
_4604
Pf6N2E2_4605 - Dihydroorotase (EC 3.5.2.3), at 5,330,519 to 5,331,790
_4605
Pf6N2E2_4606 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 5,331,787 to 5,332,791
_4606
Position (kb) 5330
5331
5332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5329.617 kb on + strand, within Pf6N2E2_4603 at 5329.617 kb on + strand, within Pf6N2E2_4603 at 5329.676 kb on + strand at 5329.676 kb on + strand at 5329.676 kb on + strand at 5329.677 kb on - strand at 5329.677 kb on - strand at 5329.679 kb on + strand at 5329.679 kb on + strand at 5329.680 kb on - strand at 5329.718 kb on + strand at 5329.719 kb on - strand at 5329.731 kb on + strand at 5329.732 kb on - strand at 5329.751 kb on + strand at 5329.752 kb on - strand at 5329.944 kb on + strand at 5329.945 kb on - strand at 5329.945 kb on - strand at 5329.976 kb on + strand at 5330.021 kb on + strand, within Pf6N2E2_4604 at 5330.021 kb on + strand, within Pf6N2E2_4604 at 5330.063 kb on + strand, within Pf6N2E2_4604 at 5330.064 kb on - strand, within Pf6N2E2_4604 at 5330.066 kb on + strand, within Pf6N2E2_4604 at 5330.066 kb on + strand, within Pf6N2E2_4604 at 5330.247 kb on + strand, within Pf6N2E2_4604 at 5330.248 kb on - strand, within Pf6N2E2_4604 at 5330.248 kb on - strand, within Pf6N2E2_4604 at 5330.258 kb on + strand, within Pf6N2E2_4604 at 5330.258 kb on + strand, within Pf6N2E2_4604 at 5330.258 kb on + strand, within Pf6N2E2_4604 at 5330.258 kb on + strand, within Pf6N2E2_4604 at 5330.258 kb on + strand, within Pf6N2E2_4604 at 5330.258 kb on + strand, within Pf6N2E2_4604 at 5330.258 kb on + strand, within Pf6N2E2_4604 at 5330.258 kb on + strand, within Pf6N2E2_4604 at 5330.259 kb on - strand, within Pf6N2E2_4604 at 5330.259 kb on - strand, within Pf6N2E2_4604 at 5330.259 kb on - strand, within Pf6N2E2_4604 at 5330.259 kb on - strand, within Pf6N2E2_4604 at 5330.259 kb on - strand, within Pf6N2E2_4604 at 5330.288 kb on + strand, within Pf6N2E2_4604 at 5330.288 kb on + strand, within Pf6N2E2_4604 at 5330.288 kb on + strand, within Pf6N2E2_4604 at 5330.289 kb on - strand, within Pf6N2E2_4604 at 5330.289 kb on - strand, within Pf6N2E2_4604 at 5330.289 kb on - strand, within Pf6N2E2_4604 at 5330.289 kb on - strand, within Pf6N2E2_4604 at 5330.289 kb on - strand, within Pf6N2E2_4604 at 5330.327 kb on + strand, within Pf6N2E2_4604 at 5330.327 kb on + strand, within Pf6N2E2_4604 at 5330.327 kb on + strand, within Pf6N2E2_4604 at 5330.327 kb on + strand, within Pf6N2E2_4604 at 5330.328 kb on - strand, within Pf6N2E2_4604 at 5330.365 kb on + strand at 5330.393 kb on + strand at 5330.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 5,329,617 + Pf6N2E2_4603 0.83 -0.8 5,329,617 + Pf6N2E2_4603 0.83 +0.7 5,329,676 + +0.0 5,329,676 + +0.1 5,329,676 + -0.9 5,329,677 - -0.3 5,329,677 - +0.0 5,329,679 + +1.2 5,329,679 + +0.2 5,329,680 - -1.5 5,329,718 + +0.6 5,329,719 - +0.0 5,329,731 + -0.0 5,329,732 - +1.2 5,329,751 + -0.3 5,329,752 - +0.2 5,329,944 + +1.6 5,329,945 - -0.2 5,329,945 - +0.7 5,329,976 + -0.2 5,330,021 + Pf6N2E2_4604 0.13 -0.6 5,330,021 + Pf6N2E2_4604 0.13 +0.0 5,330,063 + Pf6N2E2_4604 0.22 -0.2 5,330,064 - Pf6N2E2_4604 0.23 -0.4 5,330,066 + Pf6N2E2_4604 0.23 +0.2 5,330,066 + Pf6N2E2_4604 0.23 +0.4 5,330,247 + Pf6N2E2_4604 0.65 -1.3 5,330,248 - Pf6N2E2_4604 0.66 +0.5 5,330,248 - Pf6N2E2_4604 0.66 +0.3 5,330,258 + Pf6N2E2_4604 0.68 -0.5 5,330,258 + Pf6N2E2_4604 0.68 -0.7 5,330,258 + Pf6N2E2_4604 0.68 +1.5 5,330,258 + Pf6N2E2_4604 0.68 +0.2 5,330,258 + Pf6N2E2_4604 0.68 -0.3 5,330,258 + Pf6N2E2_4604 0.68 -2.1 5,330,258 + Pf6N2E2_4604 0.68 -0.6 5,330,258 + Pf6N2E2_4604 0.68 -0.3 5,330,259 - Pf6N2E2_4604 0.68 -0.4 5,330,259 - Pf6N2E2_4604 0.68 +0.2 5,330,259 - Pf6N2E2_4604 0.68 -0.9 5,330,259 - Pf6N2E2_4604 0.68 +1.8 5,330,259 - Pf6N2E2_4604 0.68 +0.4 5,330,288 + Pf6N2E2_4604 0.75 -0.1 5,330,288 + Pf6N2E2_4604 0.75 +0.2 5,330,288 + Pf6N2E2_4604 0.75 +0.3 5,330,289 - Pf6N2E2_4604 0.75 +0.1 5,330,289 - Pf6N2E2_4604 0.75 +0.2 5,330,289 - Pf6N2E2_4604 0.75 +0.8 5,330,289 - Pf6N2E2_4604 0.75 +0.4 5,330,289 - Pf6N2E2_4604 0.75 -1.3 5,330,327 + Pf6N2E2_4604 0.84 +0.5 5,330,327 + Pf6N2E2_4604 0.84 +0.2 5,330,327 + Pf6N2E2_4604 0.84 -0.2 5,330,327 + Pf6N2E2_4604 0.84 -2.7 5,330,328 - Pf6N2E2_4604 0.84 -1.6 5,330,365 + -0.9 5,330,393 + -0.2 5,330,394 - -0.7
Or see this region's nucleotide sequence