Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_460

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_459 and Pf6N2E2_460 are separated by 262 nucleotidesPf6N2E2_460 and Pf6N2E2_461 are separated by 290 nucleotides Pf6N2E2_459 - Oxidoreductase, aldo/keto reductase family, at 522,932 to 523,945 _459 Pf6N2E2_460 - Glycerate kinase (EC 2.7.1.31), at 524,208 to 525,344 _460 Pf6N2E2_461 - Methyl-accepting chemotaxis protein, at 525,635 to 527,260 _461 Position (kb) 524 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 523.356 kb on + strand, within Pf6N2E2_459at 523.356 kb on + strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.492 kb on - strand, within Pf6N2E2_459at 523.593 kb on + strand, within Pf6N2E2_459at 523.593 kb on + strand, within Pf6N2E2_459at 523.594 kb on - strand, within Pf6N2E2_459at 523.594 kb on - strand, within Pf6N2E2_459at 523.594 kb on - strandat 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.608 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.653 kb on - strand, within Pf6N2E2_459at 523.788 kb on + strand, within Pf6N2E2_459at 523.788 kb on + strand, within Pf6N2E2_459at 523.788 kb on + strand, within Pf6N2E2_459at 523.939 kb on - strandat 524.103 kb on + strandat 524.104 kb on - strandat 524.204 kb on + strandat 524.204 kb on + strandat 524.205 kb on - strandat 524.205 kb on - strandat 524.207 kb on + strandat 524.207 kb on + strandat 525.006 kb on - strand, within Pf6N2E2_460at 525.207 kb on + strand, within Pf6N2E2_460at 525.207 kb on + strand, within Pf6N2E2_460at 525.207 kb on + strand, within Pf6N2E2_460at 525.208 kb on - strand, within Pf6N2E2_460at 525.361 kb on - strandat 525.361 kb on - strandat 525.566 kb on - strandat 525.566 kb on - strandat 525.566 kb on - strandat 525.566 kb on - strandat 525.566 kb on - strandat 525.566 kb on - strandat 525.566 kb on - strandat 525.566 kb on - strandat 525.566 kb on - strandat 525.576 kb on - strandat 525.718 kb on - strandat 525.938 kb on + strand, within Pf6N2E2_461at 525.977 kb on + strand, within Pf6N2E2_461at 525.977 kb on + strand, within Pf6N2E2_461at 525.977 kb on + strand, within Pf6N2E2_461at 525.977 kb on + strand, within Pf6N2E2_461at 525.978 kb on - strand, within Pf6N2E2_461at 525.978 kb on - strand, within Pf6N2E2_461at 525.978 kb on - strand, within Pf6N2E2_461at 525.978 kb on - strand, within Pf6N2E2_461at 526.007 kb on + strand, within Pf6N2E2_461at 526.007 kb on + strand, within Pf6N2E2_461at 526.007 kb on + strand, within Pf6N2E2_461at 526.007 kb on + strand, within Pf6N2E2_461at 526.082 kb on - strand, within Pf6N2E2_461at 526.188 kb on - strand, within Pf6N2E2_461at 526.188 kb on - strand, within Pf6N2E2_461at 526.213 kb on + strand, within Pf6N2E2_461at 526.213 kb on + strand, within Pf6N2E2_461at 526.213 kb on + strand, within Pf6N2E2_461at 526.214 kb on - strand, within Pf6N2E2_461

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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523,356 + Pf6N2E2_459 0.42 +0.2
523,356 + Pf6N2E2_459 0.42 -2.8
523,357 - Pf6N2E2_459 0.42 +0.8
523,357 - Pf6N2E2_459 0.42 +0.4
523,357 - Pf6N2E2_459 0.42 -0.4
523,411 - Pf6N2E2_459 0.47 +0.1
523,411 - Pf6N2E2_459 0.47 +1.1
523,411 - Pf6N2E2_459 0.47 +0.8
523,411 - Pf6N2E2_459 0.47 -0.3
523,411 - Pf6N2E2_459 0.47 -0.8
523,492 - Pf6N2E2_459 0.55 +0.5
523,593 + Pf6N2E2_459 0.65 +0.8
523,593 + Pf6N2E2_459 0.65 +0.5
523,594 - Pf6N2E2_459 0.65 +0.9
523,594 - Pf6N2E2_459 0.65 +1.2
523,594 - +1.8
523,596 + Pf6N2E2_459 0.65 +0.9
523,596 + Pf6N2E2_459 0.65 -1.4
523,596 + Pf6N2E2_459 0.65 +1.1
523,596 + Pf6N2E2_459 0.65 +0.6
523,596 + Pf6N2E2_459 0.65 +1.4
523,596 + Pf6N2E2_459 0.65 -0.3
523,596 + Pf6N2E2_459 0.65 +0.6
523,596 + Pf6N2E2_459 0.65 +0.1
523,596 + Pf6N2E2_459 0.65 +0.7
523,596 + Pf6N2E2_459 0.65 -0.4
523,596 + Pf6N2E2_459 0.65 +0.7
523,596 + Pf6N2E2_459 0.65 -0.5
523,597 - Pf6N2E2_459 0.66 +1.0
523,597 - Pf6N2E2_459 0.66 +1.3
523,597 - Pf6N2E2_459 0.66 -0.4
523,597 - Pf6N2E2_459 0.66 -1.0
523,597 - Pf6N2E2_459 0.66 +0.3
523,597 - Pf6N2E2_459 0.66 +0.5
523,597 - Pf6N2E2_459 0.66 -0.7
523,597 - Pf6N2E2_459 0.66 -0.8
523,597 - Pf6N2E2_459 0.66 -0.9
523,597 - Pf6N2E2_459 0.66 +0.1
523,597 - Pf6N2E2_459 0.66 -0.9
523,608 + Pf6N2E2_459 0.67 -0.8
523,652 + Pf6N2E2_459 0.71 +0.9
523,652 + Pf6N2E2_459 0.71 +0.1
523,652 + Pf6N2E2_459 0.71 +0.8
523,652 + Pf6N2E2_459 0.71 +0.6
523,652 + Pf6N2E2_459 0.71 -0.6
523,653 - Pf6N2E2_459 0.71 +0.6
523,788 + Pf6N2E2_459 0.84 +1.4
523,788 + Pf6N2E2_459 0.84 -0.7
523,788 + Pf6N2E2_459 0.84 +0.0
523,939 - -0.4
524,103 + -0.8
524,104 - -0.8
524,204 + +0.1
524,204 + +0.5
524,205 - -1.2
524,205 - +0.2
524,207 + +0.6
524,207 + -0.6
525,006 - Pf6N2E2_460 0.70 -0.4
525,207 + Pf6N2E2_460 0.88 +0.6
525,207 + Pf6N2E2_460 0.88 -0.8
525,207 + Pf6N2E2_460 0.88 -0.3
525,208 - Pf6N2E2_460 0.88 -0.7
525,361 - -1.0
525,361 - +0.7
525,566 - +1.0
525,566 - +1.1
525,566 - -0.2
525,566 - +0.7
525,566 - +0.4
525,566 - +0.8
525,566 - -1.0
525,566 - -0.8
525,566 - -0.5
525,576 - -1.5
525,718 - +0.1
525,938 + Pf6N2E2_461 0.19 -1.0
525,977 + Pf6N2E2_461 0.21 +0.4
525,977 + Pf6N2E2_461 0.21 +0.7
525,977 + Pf6N2E2_461 0.21 -1.3
525,977 + Pf6N2E2_461 0.21 -1.4
525,978 - Pf6N2E2_461 0.21 -0.1
525,978 - Pf6N2E2_461 0.21 +0.0
525,978 - Pf6N2E2_461 0.21 +1.1
525,978 - Pf6N2E2_461 0.21 +0.1
526,007 + Pf6N2E2_461 0.23 -0.7
526,007 + Pf6N2E2_461 0.23 -1.1
526,007 + Pf6N2E2_461 0.23 +0.3
526,007 + Pf6N2E2_461 0.23 +0.8
526,082 - Pf6N2E2_461 0.27 +2.3
526,188 - Pf6N2E2_461 0.34 -0.6
526,188 - Pf6N2E2_461 0.34 +0.4
526,213 + Pf6N2E2_461 0.36 +0.3
526,213 + Pf6N2E2_461 0.36 +1.2
526,213 + Pf6N2E2_461 0.36 +0.6
526,214 - Pf6N2E2_461 0.36 +0.1

Or see this region's nucleotide sequence