Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4372 and Pf6N2E2_4373 are separated by 53 nucleotides Pf6N2E2_4373 and Pf6N2E2_4374 are separated by 27 nucleotides
Pf6N2E2_4372 - FIG00460773: hypothetical protein, at 5,100,511 to 5,101,755
_4372
Pf6N2E2_4373 - Acetylglutamate kinase (EC 2.7.2.8), at 5,101,809 to 5,102,714
_4373
Pf6N2E2_4374 - Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2), at 5,102,742 to 5,104,139
_4374
Position (kb) 5101
5102
5103 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5100.886 kb on + strand, within Pf6N2E2_4372 at 5100.896 kb on + strand, within Pf6N2E2_4372 at 5100.896 kb on + strand, within Pf6N2E2_4372 at 5100.896 kb on + strand, within Pf6N2E2_4372 at 5101.161 kb on + strand, within Pf6N2E2_4372 at 5101.161 kb on + strand, within Pf6N2E2_4372 at 5101.161 kb on + strand, within Pf6N2E2_4372 at 5101.161 kb on + strand, within Pf6N2E2_4372 at 5101.247 kb on + strand, within Pf6N2E2_4372 at 5101.295 kb on + strand, within Pf6N2E2_4372 at 5101.343 kb on + strand, within Pf6N2E2_4372 at 5101.343 kb on + strand, within Pf6N2E2_4372 at 5101.343 kb on + strand, within Pf6N2E2_4372 at 5101.398 kb on + strand, within Pf6N2E2_4372 at 5101.425 kb on + strand, within Pf6N2E2_4372 at 5101.466 kb on + strand, within Pf6N2E2_4372 at 5101.672 kb on + strand at 5101.672 kb on + strand at 5101.779 kb on + strand at 5101.780 kb on - strand at 5101.780 kb on - strand at 5101.780 kb on - strand at 5101.810 kb on + strand at 5101.811 kb on - strand at 5101.811 kb on - strand at 5101.811 kb on - strand at 5101.839 kb on - strand at 5101.839 kb on - strand at 5101.839 kb on - strand at 5102.752 kb on - strand at 5102.752 kb on - strand at 5102.752 kb on - strand at 5102.752 kb on - strand at 5102.845 kb on - strand at 5103.002 kb on + strand, within Pf6N2E2_4374 at 5103.002 kb on + strand, within Pf6N2E2_4374 at 5103.017 kb on + strand, within Pf6N2E2_4374 at 5103.018 kb on - strand, within Pf6N2E2_4374 at 5103.018 kb on - strand, within Pf6N2E2_4374 at 5103.024 kb on - strand, within Pf6N2E2_4374 at 5103.024 kb on - strand, within Pf6N2E2_4374 at 5103.103 kb on + strand, within Pf6N2E2_4374 at 5103.103 kb on + strand, within Pf6N2E2_4374 at 5103.103 kb on + strand, within Pf6N2E2_4374 at 5103.103 kb on + strand, within Pf6N2E2_4374 at 5103.103 kb on + strand, within Pf6N2E2_4374 at 5103.103 kb on + strand, within Pf6N2E2_4374 at 5103.103 kb on + strand, within Pf6N2E2_4374 at 5103.103 kb on + strand, within Pf6N2E2_4374 at 5103.104 kb on - strand, within Pf6N2E2_4374 at 5103.104 kb on - strand, within Pf6N2E2_4374 at 5103.104 kb on - strand, within Pf6N2E2_4374 at 5103.282 kb on - strand, within Pf6N2E2_4374 at 5103.658 kb on + strand, within Pf6N2E2_4374 at 5103.659 kb on - strand, within Pf6N2E2_4374 at 5103.659 kb on - strand, within Pf6N2E2_4374
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 5,100,886 + Pf6N2E2_4372 0.30 -0.5 5,100,896 + Pf6N2E2_4372 0.31 +0.9 5,100,896 + Pf6N2E2_4372 0.31 +0.1 5,100,896 + Pf6N2E2_4372 0.31 -0.9 5,101,161 + Pf6N2E2_4372 0.52 +0.0 5,101,161 + Pf6N2E2_4372 0.52 +0.0 5,101,161 + Pf6N2E2_4372 0.52 -0.5 5,101,161 + Pf6N2E2_4372 0.52 +0.3 5,101,247 + Pf6N2E2_4372 0.59 -2.3 5,101,295 + Pf6N2E2_4372 0.63 +0.9 5,101,343 + Pf6N2E2_4372 0.67 +1.0 5,101,343 + Pf6N2E2_4372 0.67 -3.4 5,101,343 + Pf6N2E2_4372 0.67 -0.7 5,101,398 + Pf6N2E2_4372 0.71 -0.7 5,101,425 + Pf6N2E2_4372 0.73 +0.5 5,101,466 + Pf6N2E2_4372 0.77 +0.0 5,101,672 + -0.1 5,101,672 + +1.2 5,101,779 + -0.5 5,101,780 - +0.5 5,101,780 - +0.9 5,101,780 - +0.3 5,101,810 + -0.3 5,101,811 - +0.5 5,101,811 - -1.1 5,101,811 - -1.6 5,101,839 - -2.6 5,101,839 - -1.8 5,101,839 - -2.4 5,102,752 - +0.3 5,102,752 - -0.0 5,102,752 - +0.5 5,102,752 - +0.0 5,102,845 - -0.1 5,103,002 + Pf6N2E2_4374 0.19 -3.0 5,103,002 + Pf6N2E2_4374 0.19 -0.1 5,103,017 + Pf6N2E2_4374 0.20 -3.2 5,103,018 - Pf6N2E2_4374 0.20 -1.2 5,103,018 - Pf6N2E2_4374 0.20 -1.4 5,103,024 - Pf6N2E2_4374 0.20 -1.7 5,103,024 - Pf6N2E2_4374 0.20 +0.8 5,103,103 + Pf6N2E2_4374 0.26 -0.1 5,103,103 + Pf6N2E2_4374 0.26 -1.6 5,103,103 + Pf6N2E2_4374 0.26 -0.2 5,103,103 + Pf6N2E2_4374 0.26 -2.4 5,103,103 + Pf6N2E2_4374 0.26 -1.1 5,103,103 + Pf6N2E2_4374 0.26 -0.3 5,103,103 + Pf6N2E2_4374 0.26 -2.6 5,103,103 + Pf6N2E2_4374 0.26 -1.5 5,103,104 - Pf6N2E2_4374 0.26 +0.1 5,103,104 - Pf6N2E2_4374 0.26 -0.8 5,103,104 - Pf6N2E2_4374 0.26 -0.7 5,103,282 - Pf6N2E2_4374 0.39 +0.4 5,103,658 + Pf6N2E2_4374 0.66 -1.2 5,103,659 - Pf6N2E2_4374 0.66 +1.1 5,103,659 - Pf6N2E2_4374 0.66 -3.0
Or see this region's nucleotide sequence