Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4370

Experiment: Phosphomycin 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4368 and Pf6N2E2_4369 are separated by 93 nucleotidesPf6N2E2_4369 and Pf6N2E2_4370 are separated by 83 nucleotidesPf6N2E2_4370 and Pf6N2E2_4371 are separated by 44 nucleotidesPf6N2E2_4371 and Pf6N2E2_4372 are separated by 542 nucleotides Pf6N2E2_4368 - Sodium/glutamate symport protein, at 5,096,800 to 5,098,008 _4368 Pf6N2E2_4369 - Exodeoxyribonuclease III (EC 3.1.11.2), at 5,098,102 to 5,098,881 _4369 Pf6N2E2_4370 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 5,098,965 to 5,099,609 _4370 Pf6N2E2_4371 - hypothetical protein, at 5,099,654 to 5,099,968 _4371 Pf6N2E2_4372 - FIG00460773: hypothetical protein, at 5,100,511 to 5,101,755 _4372 Position (kb) 5098 5099 5100Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5097.976 kb on + strandat 5097.976 kb on + strandat 5097.976 kb on + strandat 5097.976 kb on + strandat 5098.033 kb on + strandat 5098.046 kb on + strandat 5098.047 kb on - strandat 5098.047 kb on - strandat 5098.047 kb on - strandat 5098.103 kb on + strandat 5098.103 kb on + strandat 5098.103 kb on + strandat 5098.103 kb on + strandat 5098.103 kb on + strandat 5098.104 kb on - strandat 5098.104 kb on - strandat 5098.104 kb on - strandat 5098.104 kb on - strandat 5098.104 kb on - strandat 5098.104 kb on - strandat 5098.104 kb on - strandat 5098.448 kb on + strand, within Pf6N2E2_4369at 5098.448 kb on + strand, within Pf6N2E2_4369at 5098.449 kb on - strand, within Pf6N2E2_4369at 5098.449 kb on - strand, within Pf6N2E2_4369at 5098.715 kb on + strand, within Pf6N2E2_4369at 5098.724 kb on + strand, within Pf6N2E2_4369at 5098.724 kb on + strand, within Pf6N2E2_4369at 5098.725 kb on - strand, within Pf6N2E2_4369at 5098.725 kb on - strand, within Pf6N2E2_4369at 5098.881 kb on + strandat 5098.882 kb on - strandat 5098.882 kb on - strandat 5098.908 kb on + strandat 5098.909 kb on - strandat 5098.929 kb on - strandat 5098.932 kb on + strandat 5098.936 kb on + strandat 5098.936 kb on + strandat 5098.947 kb on + strandat 5099.061 kb on + strandat 5099.178 kb on + strand, within Pf6N2E2_4370at 5099.587 kb on - strandat 5099.641 kb on + strandat 5099.641 kb on + strandat 5099.681 kb on + strandat 5099.681 kb on + strandat 5099.681 kb on + strandat 5099.682 kb on - strandat 5099.769 kb on - strand, within Pf6N2E2_4371at 5099.785 kb on - strand, within Pf6N2E2_4371at 5099.896 kb on - strand, within Pf6N2E2_4371at 5099.899 kb on + strand, within Pf6N2E2_4371at 5099.899 kb on + strand, within Pf6N2E2_4371at 5099.899 kb on + strand, within Pf6N2E2_4371at 5099.900 kb on - strand, within Pf6N2E2_4371at 5099.910 kb on + strand, within Pf6N2E2_4371at 5099.910 kb on + strand, within Pf6N2E2_4371at 5099.910 kb on + strand, within Pf6N2E2_4371at 5099.910 kb on + strand, within Pf6N2E2_4371at 5099.910 kb on + strand, within Pf6N2E2_4371at 5099.911 kb on - strand, within Pf6N2E2_4371at 5099.911 kb on - strand, within Pf6N2E2_4371at 5099.911 kb on - strand, within Pf6N2E2_4371at 5099.911 kb on - strand, within Pf6N2E2_4371at 5099.911 kb on - strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.938 kb on + strandat 5099.938 kb on + strandat 5099.938 kb on + strandat 5099.938 kb on + strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.951 kb on - strandat 5099.959 kb on - strandat 5099.987 kb on - strandat 5100.057 kb on + strandat 5100.058 kb on - strandat 5100.116 kb on - strandat 5100.124 kb on + strandat 5100.125 kb on - strandat 5100.176 kb on + strandat 5100.176 kb on + strandat 5100.177 kb on - strandat 5100.230 kb on + strandat 5100.230 kb on + strandat 5100.230 kb on + strandat 5100.231 kb on - strandat 5100.231 kb on - strandat 5100.231 kb on - strandat 5100.231 kb on - strandat 5100.231 kb on - strandat 5100.231 kb on - strandat 5100.249 kb on + strandat 5100.249 kb on + strandat 5100.250 kb on - strandat 5100.314 kb on + strandat 5100.314 kb on + strandat 5100.314 kb on + strandat 5100.337 kb on + strandat 5100.338 kb on - strandat 5100.338 kb on - strandat 5100.358 kb on + strandat 5100.358 kb on + strandat 5100.359 kb on - strandat 5100.467 kb on - strandat 5100.467 kb on - strandat 5100.473 kb on - strandat 5100.473 kb on - strandat 5100.480 kb on + strandat 5100.480 kb on + strandat 5100.593 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
remove
5,097,976 + -0.4
5,097,976 + -0.8
5,097,976 + +0.3
5,097,976 + -2.0
5,098,033 + -1.1
5,098,046 + -2.5
5,098,047 - -3.5
5,098,047 - -3.1
5,098,047 - -3.0
5,098,103 + -1.3
5,098,103 + -4.1
5,098,103 + -2.9
5,098,103 + -4.1
5,098,103 + -1.7
5,098,104 - -3.2
5,098,104 - -3.3
5,098,104 - -2.3
5,098,104 - -1.0
5,098,104 - -2.4
5,098,104 - -1.8
5,098,104 - +0.0
5,098,448 + Pf6N2E2_4369 0.44 +0.3
5,098,448 + Pf6N2E2_4369 0.44 -2.0
5,098,449 - Pf6N2E2_4369 0.44 -1.3
5,098,449 - Pf6N2E2_4369 0.44 -1.7
5,098,715 + Pf6N2E2_4369 0.79 -0.5
5,098,724 + Pf6N2E2_4369 0.80 +1.9
5,098,724 + Pf6N2E2_4369 0.80 -1.7
5,098,725 - Pf6N2E2_4369 0.80 -0.5
5,098,725 - Pf6N2E2_4369 0.80 -1.3
5,098,881 + -3.3
5,098,882 - -1.1
5,098,882 - -0.1
5,098,908 + -1.0
5,098,909 - -0.5
5,098,929 - +0.3
5,098,932 + -1.2
5,098,936 + -2.3
5,098,936 + -2.9
5,098,947 + -1.1
5,099,061 + +0.3
5,099,178 + Pf6N2E2_4370 0.33 -0.7
5,099,587 - -2.2
5,099,641 + -0.3
5,099,641 + -0.6
5,099,681 + -1.8
5,099,681 + -3.6
5,099,681 + -0.5
5,099,682 - +0.3
5,099,769 - Pf6N2E2_4371 0.37 +0.9
5,099,785 - Pf6N2E2_4371 0.42 -0.4
5,099,896 - Pf6N2E2_4371 0.77 -0.9
5,099,899 + Pf6N2E2_4371 0.78 -0.4
5,099,899 + Pf6N2E2_4371 0.78 -0.6
5,099,899 + Pf6N2E2_4371 0.78 -0.1
5,099,900 - Pf6N2E2_4371 0.78 -1.4
5,099,910 + Pf6N2E2_4371 0.81 -1.0
5,099,910 + Pf6N2E2_4371 0.81 -2.1
5,099,910 + Pf6N2E2_4371 0.81 -2.1
5,099,910 + Pf6N2E2_4371 0.81 -0.4
5,099,910 + Pf6N2E2_4371 0.81 +1.3
5,099,911 - Pf6N2E2_4371 0.82 -0.1
5,099,911 - Pf6N2E2_4371 0.82 -0.7
5,099,911 - Pf6N2E2_4371 0.82 -0.6
5,099,911 - Pf6N2E2_4371 0.82 +1.2
5,099,911 - Pf6N2E2_4371 0.82 -0.5
5,099,913 + Pf6N2E2_4371 0.82 -1.5
5,099,913 + Pf6N2E2_4371 0.82 -0.7
5,099,913 + Pf6N2E2_4371 0.82 +0.3
5,099,913 + Pf6N2E2_4371 0.82 -2.3
5,099,913 + Pf6N2E2_4371 0.82 -2.9
5,099,913 + Pf6N2E2_4371 0.82 -0.1
5,099,913 + Pf6N2E2_4371 0.82 -3.2
5,099,913 + Pf6N2E2_4371 0.82 +0.0
5,099,913 + Pf6N2E2_4371 0.82 +0.2
5,099,913 + Pf6N2E2_4371 0.82 -0.5
5,099,913 + Pf6N2E2_4371 0.82 -1.0
5,099,913 + Pf6N2E2_4371 0.82 -0.4
5,099,914 - Pf6N2E2_4371 0.83 +1.9
5,099,914 - Pf6N2E2_4371 0.83 -0.6
5,099,914 - Pf6N2E2_4371 0.83 -0.1
5,099,914 - Pf6N2E2_4371 0.83 -0.8
5,099,914 - Pf6N2E2_4371 0.83 +0.5
5,099,914 - Pf6N2E2_4371 0.83 -1.3
5,099,914 - Pf6N2E2_4371 0.83 -0.3
5,099,914 - Pf6N2E2_4371 0.83 +0.1
5,099,914 - Pf6N2E2_4371 0.83 -0.5
5,099,914 - Pf6N2E2_4371 0.83 -0.7
5,099,938 + +0.6
5,099,938 + +0.7
5,099,938 + -1.1
5,099,938 + -0.3
5,099,939 - -0.1
5,099,939 - +0.7
5,099,939 - -0.7
5,099,939 - +0.2
5,099,939 - +0.4
5,099,939 - -0.9
5,099,939 - -0.6
5,099,939 - +0.3
5,099,939 - -0.1
5,099,939 - +0.9
5,099,951 - +0.3
5,099,959 - +0.6
5,099,987 - +1.9
5,100,057 + +1.3
5,100,058 - -0.3
5,100,116 - +0.8
5,100,124 + +0.7
5,100,125 - -0.4
5,100,176 + -0.4
5,100,176 + -0.2
5,100,177 - +0.4
5,100,230 + +0.3
5,100,230 + -0.7
5,100,230 + -0.4
5,100,231 - +0.5
5,100,231 - +0.0
5,100,231 - +0.2
5,100,231 - +1.4
5,100,231 - +0.0
5,100,231 - -0.1
5,100,249 + -0.6
5,100,249 + -2.4
5,100,250 - +0.9
5,100,314 + +0.2
5,100,314 + +0.6
5,100,314 + -1.5
5,100,337 + +0.6
5,100,338 - +0.1
5,100,338 - -0.5
5,100,358 + +0.4
5,100,358 + -0.4
5,100,359 - -2.3
5,100,467 - +0.1
5,100,467 - +1.2
5,100,473 - -0.0
5,100,473 - -1.3
5,100,480 + -0.2
5,100,480 + +0.7
5,100,593 + +0.4

Or see this region's nucleotide sequence