Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4353

Experiment: Phosphomycin 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4352 and Pf6N2E2_4353 are separated by 9 nucleotidesPf6N2E2_4353 and Pf6N2E2_4354 are separated by 324 nucleotides Pf6N2E2_4352 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 5,082,017 to 5,084,092 _4352 Pf6N2E2_4353 - Hydrogen peroxide-inducible genes activator, at 5,084,102 to 5,085,022 _4353 Pf6N2E2_4354 - Ferric siderophore transport system, periplasmic binding protein TonB, at 5,085,347 to 5,086,102 _4354 Position (kb) 5084 5085 5086Strain fitness (log2 ratio) -3 -2 -1 0 1at 5083.701 kb on + strand, within Pf6N2E2_4352at 5083.713 kb on + strand, within Pf6N2E2_4352at 5083.713 kb on + strand, within Pf6N2E2_4352at 5083.713 kb on + strand, within Pf6N2E2_4352at 5083.713 kb on + strand, within Pf6N2E2_4352at 5083.714 kb on - strand, within Pf6N2E2_4352at 5083.714 kb on - strand, within Pf6N2E2_4352at 5083.809 kb on + strand, within Pf6N2E2_4352at 5083.931 kb on + strandat 5083.932 kb on - strandat 5084.103 kb on + strandat 5084.103 kb on + strandat 5084.104 kb on - strandat 5084.104 kb on - strandat 5084.104 kb on - strandat 5084.263 kb on - strand, within Pf6N2E2_4353at 5084.303 kb on - strand, within Pf6N2E2_4353at 5084.527 kb on - strand, within Pf6N2E2_4353at 5084.527 kb on - strand, within Pf6N2E2_4353at 5084.527 kb on - strand, within Pf6N2E2_4353at 5084.527 kb on - strand, within Pf6N2E2_4353at 5084.542 kb on - strand, within Pf6N2E2_4353at 5084.655 kb on + strand, within Pf6N2E2_4353at 5085.001 kb on - strandat 5085.001 kb on - strandat 5085.006 kb on - strandat 5085.006 kb on - strandat 5085.054 kb on + strandat 5085.055 kb on - strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.176 kb on - strandat 5085.176 kb on - strandat 5085.176 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.245 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
remove
5,083,701 + Pf6N2E2_4352 0.81 -2.7
5,083,713 + Pf6N2E2_4352 0.82 -0.7
5,083,713 + Pf6N2E2_4352 0.82 -2.1
5,083,713 + Pf6N2E2_4352 0.82 -0.5
5,083,713 + Pf6N2E2_4352 0.82 +0.3
5,083,714 - Pf6N2E2_4352 0.82 -1.3
5,083,714 - Pf6N2E2_4352 0.82 -2.2
5,083,809 + Pf6N2E2_4352 0.86 -1.8
5,083,931 + -2.7
5,083,932 - -1.9
5,084,103 + -2.9
5,084,103 + -1.2
5,084,104 - -0.5
5,084,104 - +0.6
5,084,104 - +0.6
5,084,263 - Pf6N2E2_4353 0.17 -2.2
5,084,303 - Pf6N2E2_4353 0.22 -1.1
5,084,527 - Pf6N2E2_4353 0.46 -3.4
5,084,527 - Pf6N2E2_4353 0.46 -1.1
5,084,527 - Pf6N2E2_4353 0.46 -1.6
5,084,527 - Pf6N2E2_4353 0.46 -2.1
5,084,542 - Pf6N2E2_4353 0.48 -2.4
5,084,655 + Pf6N2E2_4353 0.60 -2.0
5,085,001 - -2.7
5,085,001 - -1.6
5,085,006 - -3.2
5,085,006 - -1.1
5,085,054 + -1.6
5,085,055 - -1.1
5,085,175 + -0.8
5,085,175 + +0.6
5,085,175 + -1.5
5,085,175 + +0.3
5,085,175 + -0.7
5,085,175 + -0.0
5,085,175 + -0.2
5,085,175 + +0.3
5,085,175 + +0.7
5,085,175 + +0.9
5,085,175 + -1.8
5,085,176 - +1.0
5,085,176 - +0.4
5,085,176 - +0.2
5,085,180 - -1.3
5,085,180 - -0.8
5,085,180 - -0.6
5,085,180 - +1.2
5,085,180 - -0.9
5,085,180 - +0.5
5,085,180 - +0.0
5,085,245 - -0.4

Or see this region's nucleotide sequence