Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4084

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4082 and Pf6N2E2_4083 are separated by 9 nucleotidesPf6N2E2_4083 and Pf6N2E2_4084 are separated by 385 nucleotidesPf6N2E2_4084 and Pf6N2E2_4085 are separated by 167 nucleotides Pf6N2E2_4082 - Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21), at 4,758,994 to 4,759,416 _4082 Pf6N2E2_4083 - hypothetical protein, at 4,759,426 to 4,759,626 _4083 Pf6N2E2_4084 - Transcriptional regulator, at 4,760,012 to 4,760,929 _4084 Pf6N2E2_4085 - Aspartate ammonia-lyase (EC 4.3.1.1), at 4,761,097 to 4,762,533 _4085 Position (kb) 4760 4761Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4759.566 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.606 kb on - strand, within Pf6N2E2_4083at 4759.673 kb on + strandat 4759.674 kb on - strandat 4759.905 kb on + strandat 4759.905 kb on + strandat 4759.905 kb on + strandat 4760.256 kb on + strand, within Pf6N2E2_4084at 4760.257 kb on - strandat 4760.257 kb on - strand, within Pf6N2E2_4084at 4760.332 kb on - strand, within Pf6N2E2_4084at 4760.481 kb on + strand, within Pf6N2E2_4084at 4760.481 kb on + strand, within Pf6N2E2_4084at 4760.482 kb on - strand, within Pf6N2E2_4084at 4760.482 kb on - strand, within Pf6N2E2_4084at 4760.482 kb on - strand, within Pf6N2E2_4084at 4760.645 kb on + strand, within Pf6N2E2_4084at 4760.645 kb on + strand, within Pf6N2E2_4084at 4760.645 kb on + strand, within Pf6N2E2_4084at 4760.645 kb on + strand, within Pf6N2E2_4084at 4760.645 kb on + strand, within Pf6N2E2_4084at 4760.646 kb on - strand, within Pf6N2E2_4084at 4760.646 kb on - strand, within Pf6N2E2_4084at 4760.646 kb on - strand, within Pf6N2E2_4084at 4760.646 kb on - strand, within Pf6N2E2_4084at 4761.039 kb on - strandat 4761.179 kb on - strandat 4761.502 kb on + strand, within Pf6N2E2_4085

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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4,759,566 - Pf6N2E2_4083 0.70 +2.7
4,759,606 - Pf6N2E2_4083 0.90 +1.9
4,759,606 - Pf6N2E2_4083 0.90 +0.1
4,759,606 - Pf6N2E2_4083 0.90 +1.0
4,759,606 - Pf6N2E2_4083 0.90 +0.1
4,759,606 - Pf6N2E2_4083 0.90 +0.7
4,759,673 + +1.2
4,759,674 - +0.1
4,759,905 + +0.3
4,759,905 + +0.0
4,759,905 + -0.3
4,760,256 + Pf6N2E2_4084 0.27 -1.5
4,760,257 - +0.9
4,760,257 - Pf6N2E2_4084 0.27 -1.8
4,760,332 - Pf6N2E2_4084 0.35 -2.8
4,760,481 + Pf6N2E2_4084 0.51 -3.5
4,760,481 + Pf6N2E2_4084 0.51 -2.5
4,760,482 - Pf6N2E2_4084 0.51 -1.4
4,760,482 - Pf6N2E2_4084 0.51 -3.7
4,760,482 - Pf6N2E2_4084 0.51 -1.3
4,760,645 + Pf6N2E2_4084 0.69 -2.2
4,760,645 + Pf6N2E2_4084 0.69 -2.7
4,760,645 + Pf6N2E2_4084 0.69 -2.9
4,760,645 + Pf6N2E2_4084 0.69 -2.3
4,760,645 + Pf6N2E2_4084 0.69 -2.4
4,760,646 - Pf6N2E2_4084 0.69 -2.5
4,760,646 - Pf6N2E2_4084 0.69 -2.4
4,760,646 - Pf6N2E2_4084 0.69 -2.3
4,760,646 - Pf6N2E2_4084 0.69 -3.8
4,761,039 - -0.2
4,761,179 - -0.2
4,761,502 + Pf6N2E2_4085 0.28 -2.5

Or see this region's nucleotide sequence