Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4039

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4038 and Pf6N2E2_4039 are separated by 15 nucleotidesPf6N2E2_4039 and Pf6N2E2_4040 overlap by 1 nucleotides Pf6N2E2_4038 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 4,719,421 to 4,720,647 _4038 Pf6N2E2_4039 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 4,720,663 to 4,720,986 _4039 Pf6N2E2_4040 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 4,720,986 to 4,722,422 _4040 Position (kb) 4720 4721Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4719.673 kb on + strand, within Pf6N2E2_4038at 4719.673 kb on + strand, within Pf6N2E2_4038at 4719.673 kb on + strand, within Pf6N2E2_4038at 4719.673 kb on + strand, within Pf6N2E2_4038at 4719.674 kb on - strand, within Pf6N2E2_4038at 4719.674 kb on - strand, within Pf6N2E2_4038at 4719.674 kb on - strand, within Pf6N2E2_4038at 4719.674 kb on - strand, within Pf6N2E2_4038at 4719.674 kb on - strand, within Pf6N2E2_4038at 4719.849 kb on + strand, within Pf6N2E2_4038at 4719.849 kb on + strand, within Pf6N2E2_4038at 4719.850 kb on - strand, within Pf6N2E2_4038at 4719.850 kb on - strand, within Pf6N2E2_4038at 4719.852 kb on + strand, within Pf6N2E2_4038at 4719.853 kb on - strand, within Pf6N2E2_4038at 4719.882 kb on + strand, within Pf6N2E2_4038at 4719.883 kb on - strand, within Pf6N2E2_4038at 4719.883 kb on - strand, within Pf6N2E2_4038at 4719.883 kb on - strand, within Pf6N2E2_4038at 4719.883 kb on - strand, within Pf6N2E2_4038at 4719.938 kb on - strand, within Pf6N2E2_4038at 4719.938 kb on - strand, within Pf6N2E2_4038at 4720.169 kb on - strand, within Pf6N2E2_4038at 4720.169 kb on - strand, within Pf6N2E2_4038at 4720.213 kb on + strand, within Pf6N2E2_4038at 4720.407 kb on + strand, within Pf6N2E2_4038at 4720.408 kb on - strand, within Pf6N2E2_4038at 4720.514 kb on - strand, within Pf6N2E2_4038at 4720.514 kb on - strand, within Pf6N2E2_4038at 4720.514 kb on - strand, within Pf6N2E2_4038at 4720.514 kb on - strand, within Pf6N2E2_4038at 4720.635 kb on + strandat 4720.636 kb on - strandat 4720.674 kb on + strandat 4720.674 kb on + strandat 4720.674 kb on + strandat 4720.674 kb on + strandat 4720.674 kb on + strandat 4720.675 kb on - strandat 4720.675 kb on - strandat 4720.675 kb on - strandat 4720.675 kb on - strandat 4720.675 kb on - strandat 4720.675 kb on - strandat 4720.675 kb on - strandat 4720.675 kb on - strandat 4720.675 kb on - strandat 4720.675 kb on - strandat 4720.675 kb on - strandat 4720.690 kb on + strandat 4720.690 kb on + strandat 4720.690 kb on + strandat 4720.690 kb on + strandat 4720.690 kb on + strandat 4720.690 kb on + strandat 4720.690 kb on + strandat 4720.690 kb on + strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.691 kb on - strandat 4720.720 kb on + strand, within Pf6N2E2_4039at 4720.720 kb on + strand, within Pf6N2E2_4039at 4720.720 kb on + strand, within Pf6N2E2_4039at 4720.721 kb on - strand, within Pf6N2E2_4039at 4720.721 kb on - strand, within Pf6N2E2_4039at 4720.721 kb on - strand, within Pf6N2E2_4039at 4720.721 kb on - strand, within Pf6N2E2_4039at 4720.721 kb on - strand, within Pf6N2E2_4039at 4720.721 kb on - strand, within Pf6N2E2_4039at 4720.721 kb on - strand, within Pf6N2E2_4039at 4720.721 kb on - strand, within Pf6N2E2_4039at 4720.729 kb on + strand, within Pf6N2E2_4039at 4720.984 kb on + strandat 4720.984 kb on + strandat 4720.984 kb on + strandat 4720.984 kb on + strandat 4720.984 kb on + strandat 4720.984 kb on + strandat 4720.985 kb on - strandat 4720.985 kb on - strandat 4720.985 kb on - strandat 4720.985 kb on - strandat 4720.985 kb on - strandat 4720.985 kb on - strandat 4720.985 kb on - strandat 4720.985 kb on - strandat 4721.013 kb on + strandat 4721.013 kb on + strandat 4721.014 kb on - strandat 4721.014 kb on - strandat 4721.138 kb on + strand, within Pf6N2E2_4040at 4721.138 kb on + strand, within Pf6N2E2_4040at 4721.138 kb on + strand, within Pf6N2E2_4040at 4721.138 kb on + strand, within Pf6N2E2_4040at 4721.138 kb on + strand, within Pf6N2E2_4040at 4721.139 kb on - strand, within Pf6N2E2_4040at 4721.139 kb on - strand, within Pf6N2E2_4040at 4721.139 kb on - strand, within Pf6N2E2_4040at 4721.139 kb on - strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.142 kb on + strand, within Pf6N2E2_4040at 4721.143 kb on - strand, within Pf6N2E2_4040at 4721.143 kb on - strand, within Pf6N2E2_4040at 4721.143 kb on - strand, within Pf6N2E2_4040at 4721.143 kb on - strand, within Pf6N2E2_4040at 4721.143 kb on - strand, within Pf6N2E2_4040at 4721.143 kb on - strand, within Pf6N2E2_4040at 4721.143 kb on - strand, within Pf6N2E2_4040at 4721.143 kb on - strand, within Pf6N2E2_4040at 4721.144 kb on + strand, within Pf6N2E2_4040at 4721.144 kb on + strand, within Pf6N2E2_4040at 4721.144 kb on + strand, within Pf6N2E2_4040at 4721.145 kb on - strand, within Pf6N2E2_4040at 4721.145 kb on - strand, within Pf6N2E2_4040at 4721.145 kb on - strand, within Pf6N2E2_4040at 4721.145 kb on - strand, within Pf6N2E2_4040at 4721.469 kb on + strand, within Pf6N2E2_4040at 4721.469 kb on + strand, within Pf6N2E2_4040at 4721.469 kb on + strand, within Pf6N2E2_4040at 4721.469 kb on + strand, within Pf6N2E2_4040at 4721.469 kb on + strand, within Pf6N2E2_4040at 4721.469 kb on + strand, within Pf6N2E2_4040at 4721.469 kb on + strand, within Pf6N2E2_4040at 4721.470 kb on - strand, within Pf6N2E2_4040at 4721.470 kb on - strand, within Pf6N2E2_4040at 4721.470 kb on - strand, within Pf6N2E2_4040at 4721.470 kb on - strand, within Pf6N2E2_4040at 4721.470 kb on - strand, within Pf6N2E2_4040at 4721.470 kb on - strand, within Pf6N2E2_4040at 4721.470 kb on - strand, within Pf6N2E2_4040at 4721.501 kb on - strand, within Pf6N2E2_4040at 4721.694 kb on + strand, within Pf6N2E2_4040at 4721.694 kb on + strand, within Pf6N2E2_4040at 4721.695 kb on - strand, within Pf6N2E2_4040at 4721.695 kb on - strand, within Pf6N2E2_4040at 4721.695 kb on - strand, within Pf6N2E2_4040at 4721.793 kb on + strand, within Pf6N2E2_4040at 4721.793 kb on + strand, within Pf6N2E2_4040at 4721.793 kb on + strand, within Pf6N2E2_4040at 4721.793 kb on + strand, within Pf6N2E2_4040at 4721.793 kb on + strand, within Pf6N2E2_4040at 4721.793 kb on + strand, within Pf6N2E2_4040at 4721.793 kb on + strand, within Pf6N2E2_4040at 4721.793 kb on + strand, within Pf6N2E2_4040at 4721.793 kb on + strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040at 4721.794 kb on - strand, within Pf6N2E2_4040

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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4,719,673 + Pf6N2E2_4038 0.21 -0.7
4,719,673 + Pf6N2E2_4038 0.21 +0.3
4,719,673 + Pf6N2E2_4038 0.21 +0.6
4,719,673 + Pf6N2E2_4038 0.21 +0.1
4,719,674 - Pf6N2E2_4038 0.21 +0.0
4,719,674 - Pf6N2E2_4038 0.21 +0.0
4,719,674 - Pf6N2E2_4038 0.21 -0.5
4,719,674 - Pf6N2E2_4038 0.21 -0.5
4,719,674 - Pf6N2E2_4038 0.21 -0.1
4,719,849 + Pf6N2E2_4038 0.35 +1.3
4,719,849 + Pf6N2E2_4038 0.35 -0.5
4,719,850 - Pf6N2E2_4038 0.35 +1.9
4,719,850 - Pf6N2E2_4038 0.35 -0.3
4,719,852 + Pf6N2E2_4038 0.35 +0.9
4,719,853 - Pf6N2E2_4038 0.35 +0.5
4,719,882 + Pf6N2E2_4038 0.38 -0.1
4,719,883 - Pf6N2E2_4038 0.38 -0.9
4,719,883 - Pf6N2E2_4038 0.38 +0.8
4,719,883 - Pf6N2E2_4038 0.38 +2.2
4,719,883 - Pf6N2E2_4038 0.38 +0.3
4,719,938 - Pf6N2E2_4038 0.42 +0.8
4,719,938 - Pf6N2E2_4038 0.42 +0.2
4,720,169 - Pf6N2E2_4038 0.61 -0.4
4,720,169 - Pf6N2E2_4038 0.61 +0.9
4,720,213 + Pf6N2E2_4038 0.65 +1.4
4,720,407 + Pf6N2E2_4038 0.80 +1.2
4,720,408 - Pf6N2E2_4038 0.80 -0.6
4,720,514 - Pf6N2E2_4038 0.89 -0.1
4,720,514 - Pf6N2E2_4038 0.89 -0.2
4,720,514 - Pf6N2E2_4038 0.89 +1.2
4,720,514 - Pf6N2E2_4038 0.89 -0.3
4,720,635 + -1.5
4,720,636 - +0.0
4,720,674 + +0.4
4,720,674 + +0.5
4,720,674 + +0.2
4,720,674 + +1.2
4,720,674 + -0.1
4,720,675 - -0.3
4,720,675 - +0.9
4,720,675 - +0.4
4,720,675 - +0.8
4,720,675 - +0.7
4,720,675 - +1.3
4,720,675 - -1.2
4,720,675 - +0.1
4,720,675 - -1.2
4,720,675 - +0.4
4,720,675 - +1.3
4,720,690 + -0.9
4,720,690 + -0.1
4,720,690 + +1.9
4,720,690 + -0.2
4,720,690 + +0.4
4,720,690 + -2.8
4,720,690 + +0.7
4,720,690 + +0.2
4,720,691 - +0.0
4,720,691 - +1.8
4,720,691 - +1.5
4,720,691 - +0.5
4,720,691 - +0.3
4,720,691 - +0.3
4,720,691 - -0.9
4,720,691 - -0.1
4,720,691 - +0.5
4,720,691 - +0.4
4,720,691 - +0.5
4,720,691 - +0.9
4,720,691 - +0.9
4,720,720 + Pf6N2E2_4039 0.18 -2.7
4,720,720 + Pf6N2E2_4039 0.18 -1.7
4,720,720 + Pf6N2E2_4039 0.18 +1.6
4,720,721 - Pf6N2E2_4039 0.18 -1.1
4,720,721 - Pf6N2E2_4039 0.18 -1.2
4,720,721 - Pf6N2E2_4039 0.18 +0.8
4,720,721 - Pf6N2E2_4039 0.18 -0.4
4,720,721 - Pf6N2E2_4039 0.18 +0.3
4,720,721 - Pf6N2E2_4039 0.18 -1.2
4,720,721 - Pf6N2E2_4039 0.18 -0.4
4,720,721 - Pf6N2E2_4039 0.18 -0.9
4,720,729 + Pf6N2E2_4039 0.20 -0.6
4,720,984 + +0.5
4,720,984 + -0.4
4,720,984 + +0.8
4,720,984 + +0.3
4,720,984 + +0.0
4,720,984 + +0.4
4,720,985 - -1.0
4,720,985 - +0.5
4,720,985 - +0.5
4,720,985 - -0.7
4,720,985 - +0.7
4,720,985 - +1.4
4,720,985 - +0.3
4,720,985 - +0.3
4,721,013 + -0.1
4,721,013 + +0.5
4,721,014 - -0.5
4,721,014 - +1.2
4,721,138 + Pf6N2E2_4040 0.11 -0.4
4,721,138 + Pf6N2E2_4040 0.11 -0.6
4,721,138 + Pf6N2E2_4040 0.11 +1.2
4,721,138 + Pf6N2E2_4040 0.11 +0.0
4,721,138 + Pf6N2E2_4040 0.11 -0.1
4,721,139 - Pf6N2E2_4040 0.11 +0.7
4,721,139 - Pf6N2E2_4040 0.11 -0.2
4,721,139 - Pf6N2E2_4040 0.11 -0.3
4,721,139 - Pf6N2E2_4040 0.11 +0.7
4,721,142 + Pf6N2E2_4040 0.11 -0.1
4,721,142 + Pf6N2E2_4040 0.11 +0.0
4,721,142 + Pf6N2E2_4040 0.11 +2.2
4,721,142 + Pf6N2E2_4040 0.11 -0.6
4,721,142 + Pf6N2E2_4040 0.11 -0.5
4,721,142 + Pf6N2E2_4040 0.11 +0.0
4,721,142 + Pf6N2E2_4040 0.11 +1.1
4,721,142 + Pf6N2E2_4040 0.11 -2.6
4,721,142 + Pf6N2E2_4040 0.11 -0.0
4,721,142 + Pf6N2E2_4040 0.11 +1.7
4,721,142 + Pf6N2E2_4040 0.11 +0.0
4,721,142 + Pf6N2E2_4040 0.11 +1.8
4,721,142 + Pf6N2E2_4040 0.11 +1.0
4,721,142 + Pf6N2E2_4040 0.11 -0.8
4,721,142 + Pf6N2E2_4040 0.11 +0.2
4,721,143 - Pf6N2E2_4040 0.11 +0.2
4,721,143 - Pf6N2E2_4040 0.11 -0.6
4,721,143 - Pf6N2E2_4040 0.11 +1.0
4,721,143 - Pf6N2E2_4040 0.11 -0.1
4,721,143 - Pf6N2E2_4040 0.11 +0.8
4,721,143 - Pf6N2E2_4040 0.11 +0.3
4,721,143 - Pf6N2E2_4040 0.11 +1.7
4,721,143 - Pf6N2E2_4040 0.11 -0.8
4,721,144 + Pf6N2E2_4040 0.11 +0.2
4,721,144 + Pf6N2E2_4040 0.11 -0.7
4,721,144 + Pf6N2E2_4040 0.11 -0.6
4,721,145 - Pf6N2E2_4040 0.11 +1.0
4,721,145 - Pf6N2E2_4040 0.11 +0.5
4,721,145 - Pf6N2E2_4040 0.11 +0.0
4,721,145 - Pf6N2E2_4040 0.11 -0.1
4,721,469 + Pf6N2E2_4040 0.34 +0.4
4,721,469 + Pf6N2E2_4040 0.34 -0.2
4,721,469 + Pf6N2E2_4040 0.34 -1.0
4,721,469 + Pf6N2E2_4040 0.34 -1.4
4,721,469 + Pf6N2E2_4040 0.34 +0.0
4,721,469 + Pf6N2E2_4040 0.34 +0.2
4,721,469 + Pf6N2E2_4040 0.34 +0.4
4,721,470 - Pf6N2E2_4040 0.34 +0.3
4,721,470 - Pf6N2E2_4040 0.34 +0.2
4,721,470 - Pf6N2E2_4040 0.34 +0.5
4,721,470 - Pf6N2E2_4040 0.34 -0.9
4,721,470 - Pf6N2E2_4040 0.34 +1.1
4,721,470 - Pf6N2E2_4040 0.34 +0.7
4,721,470 - Pf6N2E2_4040 0.34 +1.7
4,721,501 - Pf6N2E2_4040 0.36 -0.5
4,721,694 + Pf6N2E2_4040 0.49 +0.1
4,721,694 + Pf6N2E2_4040 0.49 +0.0
4,721,695 - Pf6N2E2_4040 0.49 +0.3
4,721,695 - Pf6N2E2_4040 0.49 +1.0
4,721,695 - Pf6N2E2_4040 0.49 -1.7
4,721,793 + Pf6N2E2_4040 0.56 +0.8
4,721,793 + Pf6N2E2_4040 0.56 -0.0
4,721,793 + Pf6N2E2_4040 0.56 -1.0
4,721,793 + Pf6N2E2_4040 0.56 -1.6
4,721,793 + Pf6N2E2_4040 0.56 +1.2
4,721,793 + Pf6N2E2_4040 0.56 -0.7
4,721,793 + Pf6N2E2_4040 0.56 +0.8
4,721,793 + Pf6N2E2_4040 0.56 -1.5
4,721,793 + Pf6N2E2_4040 0.56 +0.7
4,721,794 - Pf6N2E2_4040 0.56 -0.4
4,721,794 - Pf6N2E2_4040 0.56 -1.3
4,721,794 - Pf6N2E2_4040 0.56 +1.0
4,721,794 - Pf6N2E2_4040 0.56 +0.7
4,721,794 - Pf6N2E2_4040 0.56 -0.2
4,721,794 - Pf6N2E2_4040 0.56 -1.6
4,721,794 - Pf6N2E2_4040 0.56 +0.5
4,721,794 - Pf6N2E2_4040 0.56 -1.5
4,721,794 - Pf6N2E2_4040 0.56 +0.7
4,721,794 - Pf6N2E2_4040 0.56 +1.3
4,721,794 - Pf6N2E2_4040 0.56 +1.3
4,721,794 - Pf6N2E2_4040 0.56 -1.1
4,721,794 - Pf6N2E2_4040 0.56 -0.1

Or see this region's nucleotide sequence