Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3941

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3939 and Pf6N2E2_3940 are separated by 37 nucleotidesPf6N2E2_3940 and Pf6N2E2_3941 are separated by 143 nucleotidesPf6N2E2_3941 and Pf6N2E2_3942 are separated by 22 nucleotides Pf6N2E2_3939 - Predicted integral membrane protein, at 4,576,610 to 4,577,035 _3939 Pf6N2E2_3940 - Phosphoserine phosphatase (EC 3.1.3.3), at 4,577,073 to 4,577,729 _3940 Pf6N2E2_3941 - Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-), at 4,577,873 to 4,578,352 _3941 Pf6N2E2_3942 - FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated, at 4,578,375 to 4,580,654 _3942 Position (kb) 4577 4578 4579Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4576.877 kb on + strand, within Pf6N2E2_3939at 4576.877 kb on + strand, within Pf6N2E2_3939at 4576.877 kb on + strand, within Pf6N2E2_3939at 4576.877 kb on + strand, within Pf6N2E2_3939at 4576.878 kb on - strand, within Pf6N2E2_3939at 4576.878 kb on - strand, within Pf6N2E2_3939at 4576.879 kb on + strand, within Pf6N2E2_3939at 4576.879 kb on + strand, within Pf6N2E2_3939at 4576.879 kb on + strand, within Pf6N2E2_3939at 4576.879 kb on + strand, within Pf6N2E2_3939at 4576.879 kb on + strand, within Pf6N2E2_3939at 4576.880 kb on - strand, within Pf6N2E2_3939at 4576.880 kb on - strand, within Pf6N2E2_3939at 4576.880 kb on - strand, within Pf6N2E2_3939at 4576.880 kb on - strand, within Pf6N2E2_3939at 4576.880 kb on - strand, within Pf6N2E2_3939at 4576.961 kb on - strand, within Pf6N2E2_3939at 4576.961 kb on - strand, within Pf6N2E2_3939at 4577.065 kb on + strandat 4577.201 kb on - strand, within Pf6N2E2_3940at 4577.201 kb on - strand, within Pf6N2E2_3940at 4577.206 kb on + strand, within Pf6N2E2_3940at 4577.206 kb on + strand, within Pf6N2E2_3940at 4577.206 kb on + strand, within Pf6N2E2_3940at 4577.207 kb on - strand, within Pf6N2E2_3940at 4577.207 kb on - strand, within Pf6N2E2_3940at 4577.207 kb on - strand, within Pf6N2E2_3940at 4577.207 kb on - strand, within Pf6N2E2_3940at 4577.306 kb on - strand, within Pf6N2E2_3940at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.492 kb on - strand, within Pf6N2E2_3940at 4577.560 kb on + strand, within Pf6N2E2_3940at 4577.560 kb on + strand, within Pf6N2E2_3940at 4577.590 kb on + strand, within Pf6N2E2_3940at 4577.591 kb on - strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.659 kb on + strand, within Pf6N2E2_3940at 4577.660 kb on - strand, within Pf6N2E2_3940at 4577.660 kb on - strand, within Pf6N2E2_3940at 4577.715 kb on + strandat 4577.736 kb on + strandat 4577.737 kb on - strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.801 kb on + strandat 4577.802 kb on - strandat 4577.918 kb on - strandat 4577.918 kb on - strandat 4578.257 kb on + strand, within Pf6N2E2_3941at 4578.257 kb on + strand, within Pf6N2E2_3941at 4578.257 kb on + strand, within Pf6N2E2_3941at 4578.258 kb on - strand, within Pf6N2E2_3941at 4578.258 kb on - strand, within Pf6N2E2_3941at 4578.258 kb on - strand, within Pf6N2E2_3941at 4578.258 kb on - strand, within Pf6N2E2_3941at 4578.258 kb on - strand, within Pf6N2E2_3941at 4578.303 kb on - strand, within Pf6N2E2_3941at 4578.383 kb on + strandat 4578.383 kb on + strandat 4578.383 kb on + strandat 4578.384 kb on - strandat 4578.410 kb on + strandat 4578.411 kb on - strandat 4578.411 kb on - strandat 4578.411 kb on - strandat 4578.411 kb on - strandat 4578.447 kb on - strandat 4578.451 kb on + strandat 4578.451 kb on + strandat 4578.451 kb on + strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.496 kb on - strandat 4578.666 kb on + strand, within Pf6N2E2_3942at 4578.666 kb on + strand, within Pf6N2E2_3942at 4578.667 kb on - strand, within Pf6N2E2_3942at 4578.693 kb on + strand, within Pf6N2E2_3942at 4579.128 kb on + strand, within Pf6N2E2_3942at 4579.128 kb on + strand, within Pf6N2E2_3942at 4579.128 kb on + strand, within Pf6N2E2_3942at 4579.129 kb on - strand, within Pf6N2E2_3942at 4579.264 kb on - strand, within Pf6N2E2_3942at 4579.264 kb on - strand, within Pf6N2E2_3942at 4579.317 kb on + strand, within Pf6N2E2_3942at 4579.318 kb on - strand, within Pf6N2E2_3942at 4579.318 kb on - strand, within Pf6N2E2_3942

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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4,576,877 + Pf6N2E2_3939 0.63 +0.6
4,576,877 + Pf6N2E2_3939 0.63 -1.5
4,576,877 + Pf6N2E2_3939 0.63 +0.4
4,576,877 + Pf6N2E2_3939 0.63 +0.3
4,576,878 - Pf6N2E2_3939 0.63 +0.0
4,576,878 - Pf6N2E2_3939 0.63 +1.7
4,576,879 + Pf6N2E2_3939 0.63 -1.3
4,576,879 + Pf6N2E2_3939 0.63 +2.1
4,576,879 + Pf6N2E2_3939 0.63 +0.9
4,576,879 + Pf6N2E2_3939 0.63 +0.3
4,576,879 + Pf6N2E2_3939 0.63 -0.0
4,576,880 - Pf6N2E2_3939 0.63 +1.7
4,576,880 - Pf6N2E2_3939 0.63 -0.3
4,576,880 - Pf6N2E2_3939 0.63 -0.3
4,576,880 - Pf6N2E2_3939 0.63 +1.6
4,576,880 - Pf6N2E2_3939 0.63 -0.6
4,576,961 - Pf6N2E2_3939 0.82 -0.1
4,576,961 - Pf6N2E2_3939 0.82 +0.2
4,577,065 + +1.2
4,577,201 - Pf6N2E2_3940 0.19 +0.8
4,577,201 - Pf6N2E2_3940 0.19 +0.7
4,577,206 + Pf6N2E2_3940 0.20 +1.0
4,577,206 + Pf6N2E2_3940 0.20 +1.5
4,577,206 + Pf6N2E2_3940 0.20 -0.6
4,577,207 - Pf6N2E2_3940 0.20 +0.7
4,577,207 - Pf6N2E2_3940 0.20 +1.2
4,577,207 - Pf6N2E2_3940 0.20 +0.9
4,577,207 - Pf6N2E2_3940 0.20 +0.4
4,577,306 - Pf6N2E2_3940 0.35 +1.4
4,577,491 + Pf6N2E2_3940 0.64 +1.6
4,577,491 + Pf6N2E2_3940 0.64 -0.6
4,577,491 + Pf6N2E2_3940 0.64 +2.8
4,577,491 + Pf6N2E2_3940 0.64 +1.2
4,577,492 - Pf6N2E2_3940 0.64 -0.1
4,577,560 + Pf6N2E2_3940 0.74 +1.5
4,577,560 + Pf6N2E2_3940 0.74 +1.8
4,577,590 + Pf6N2E2_3940 0.79 +1.2
4,577,591 - Pf6N2E2_3940 0.79 +2.1
4,577,623 + Pf6N2E2_3940 0.84 -1.0
4,577,623 + Pf6N2E2_3940 0.84 +2.3
4,577,623 + Pf6N2E2_3940 0.84 +0.9
4,577,623 + Pf6N2E2_3940 0.84 +2.7
4,577,623 + Pf6N2E2_3940 0.84 +1.4
4,577,623 + Pf6N2E2_3940 0.84 +2.1
4,577,623 + Pf6N2E2_3940 0.84 +1.8
4,577,623 + Pf6N2E2_3940 0.84 -0.7
4,577,623 + Pf6N2E2_3940 0.84 +1.3
4,577,623 + Pf6N2E2_3940 0.84 +2.6
4,577,623 + Pf6N2E2_3940 0.84 +1.3
4,577,623 + Pf6N2E2_3940 0.84 +1.1
4,577,624 - Pf6N2E2_3940 0.84 +0.4
4,577,624 - Pf6N2E2_3940 0.84 +3.4
4,577,624 - Pf6N2E2_3940 0.84 -0.8
4,577,624 - Pf6N2E2_3940 0.84 -1.0
4,577,659 + Pf6N2E2_3940 0.89 -0.9
4,577,660 - Pf6N2E2_3940 0.89 -1.1
4,577,660 - Pf6N2E2_3940 0.89 -0.8
4,577,715 + +1.4
4,577,736 + +2.0
4,577,737 - -1.5
4,577,796 + +0.7
4,577,796 + +0.8
4,577,796 + +1.4
4,577,796 + +1.0
4,577,796 + +2.1
4,577,797 - -0.0
4,577,797 - +0.5
4,577,797 - -0.2
4,577,797 - -1.5
4,577,797 - +0.0
4,577,797 - +0.7
4,577,797 - -1.3
4,577,797 - -0.5
4,577,801 + +0.8
4,577,802 - -2.1
4,577,918 - -2.1
4,577,918 - -2.3
4,578,257 + Pf6N2E2_3941 0.80 -1.5
4,578,257 + Pf6N2E2_3941 0.80 -2.6
4,578,257 + Pf6N2E2_3941 0.80 -2.1
4,578,258 - Pf6N2E2_3941 0.80 -3.0
4,578,258 - Pf6N2E2_3941 0.80 -2.7
4,578,258 - Pf6N2E2_3941 0.80 -3.0
4,578,258 - Pf6N2E2_3941 0.80 -3.0
4,578,258 - Pf6N2E2_3941 0.80 -2.4
4,578,303 - Pf6N2E2_3941 0.90 -1.7
4,578,383 + -0.5
4,578,383 + -2.8
4,578,383 + -1.5
4,578,384 - -0.8
4,578,410 + -1.1
4,578,411 - -3.1
4,578,411 - -2.5
4,578,411 - -1.9
4,578,411 - -2.6
4,578,447 - -1.9
4,578,451 + -0.9
4,578,451 + -1.0
4,578,451 + -1.3
4,578,452 - -3.0
4,578,452 - -1.9
4,578,452 - -2.6
4,578,452 - -0.5
4,578,452 - -0.8
4,578,452 - -0.3
4,578,452 - -0.3
4,578,452 - +0.2
4,578,496 - -1.4
4,578,666 + Pf6N2E2_3942 0.13 -3.1
4,578,666 + Pf6N2E2_3942 0.13 -2.5
4,578,667 - Pf6N2E2_3942 0.13 -0.5
4,578,693 + Pf6N2E2_3942 0.14 -0.4
4,579,128 + Pf6N2E2_3942 0.33 -1.3
4,579,128 + Pf6N2E2_3942 0.33 -1.8
4,579,128 + Pf6N2E2_3942 0.33 -1.5
4,579,129 - Pf6N2E2_3942 0.33 -1.8
4,579,264 - Pf6N2E2_3942 0.39 -0.2
4,579,264 - Pf6N2E2_3942 0.39 -0.9
4,579,317 + Pf6N2E2_3942 0.41 -1.8
4,579,318 - Pf6N2E2_3942 0.41 -3.1
4,579,318 - Pf6N2E2_3942 0.41 -2.5

Or see this region's nucleotide sequence