Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3837

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3835 and Pf6N2E2_3836 are separated by 1 nucleotidesPf6N2E2_3836 and Pf6N2E2_3837 are separated by 78 nucleotidesPf6N2E2_3837 and Pf6N2E2_3838 are separated by 63 nucleotidesPf6N2E2_3838 and Pf6N2E2_3839 are separated by 9 nucleotides Pf6N2E2_3835 - Carboxyl-terminal protease (EC 3.4.21.102), at 4,468,404 to 4,469,720 _3835 Pf6N2E2_3836 - Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase, at 4,469,722 to 4,470,501 _3836 Pf6N2E2_3837 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 4,470,580 to 4,471,326 _3837 Pf6N2E2_3838 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 4,471,390 to 4,472,160 _3838 Pf6N2E2_3839 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 4,472,170 to 4,472,907 _3839 Position (kb) 4470 4471 4472Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4469.812 kb on + strand, within Pf6N2E2_3836at 4469.812 kb on + strand, within Pf6N2E2_3836at 4469.812 kb on + strand, within Pf6N2E2_3836at 4469.812 kb on + strand, within Pf6N2E2_3836at 4469.813 kb on - strand, within Pf6N2E2_3836at 4469.868 kb on - strand, within Pf6N2E2_3836at 4470.073 kb on + strand, within Pf6N2E2_3836at 4470.074 kb on - strand, within Pf6N2E2_3836at 4470.074 kb on - strand, within Pf6N2E2_3836at 4470.075 kb on + strand, within Pf6N2E2_3836at 4470.075 kb on + strand, within Pf6N2E2_3836at 4470.076 kb on - strand, within Pf6N2E2_3836at 4470.076 kb on - strand, within Pf6N2E2_3836at 4470.076 kb on - strand, within Pf6N2E2_3836at 4470.392 kb on + strand, within Pf6N2E2_3836at 4470.392 kb on + strand, within Pf6N2E2_3836at 4470.392 kb on + strand, within Pf6N2E2_3836at 4470.392 kb on + strand, within Pf6N2E2_3836at 4470.392 kb on + strand, within Pf6N2E2_3836at 4470.393 kb on - strand, within Pf6N2E2_3836at 4470.573 kb on - strandat 4470.581 kb on + strandat 4470.582 kb on - strandat 4470.692 kb on + strand, within Pf6N2E2_3837at 4470.693 kb on - strand, within Pf6N2E2_3837at 4470.693 kb on - strand, within Pf6N2E2_3837at 4470.693 kb on - strand, within Pf6N2E2_3837at 4470.896 kb on + strand, within Pf6N2E2_3837at 4470.897 kb on - strand, within Pf6N2E2_3837at 4470.897 kb on - strand, within Pf6N2E2_3837at 4470.897 kb on - strand, within Pf6N2E2_3837at 4470.911 kb on + strand, within Pf6N2E2_3837at 4470.911 kb on + strand, within Pf6N2E2_3837at 4470.911 kb on + strand, within Pf6N2E2_3837at 4470.912 kb on - strand, within Pf6N2E2_3837at 4470.912 kb on - strand, within Pf6N2E2_3837at 4471.079 kb on + strand, within Pf6N2E2_3837at 4471.079 kb on + strand, within Pf6N2E2_3837at 4471.080 kb on - strand, within Pf6N2E2_3837at 4471.080 kb on - strand, within Pf6N2E2_3837at 4471.080 kb on - strand, within Pf6N2E2_3837at 4471.080 kb on - strand, within Pf6N2E2_3837at 4471.080 kb on - strand, within Pf6N2E2_3837at 4471.102 kb on + strand, within Pf6N2E2_3837at 4471.102 kb on + strand, within Pf6N2E2_3837at 4471.103 kb on - strand, within Pf6N2E2_3837at 4471.103 kb on - strand, within Pf6N2E2_3837at 4471.103 kb on - strand, within Pf6N2E2_3837at 4471.115 kb on + strand, within Pf6N2E2_3837at 4471.115 kb on + strand, within Pf6N2E2_3837at 4471.116 kb on - strand, within Pf6N2E2_3837at 4471.122 kb on + strand, within Pf6N2E2_3837at 4471.123 kb on - strand, within Pf6N2E2_3837at 4471.138 kb on + strand, within Pf6N2E2_3837at 4471.139 kb on - strand, within Pf6N2E2_3837at 4471.217 kb on + strand, within Pf6N2E2_3837at 4471.217 kb on + strand, within Pf6N2E2_3837at 4471.217 kb on + strand, within Pf6N2E2_3837at 4471.217 kb on + strand, within Pf6N2E2_3837at 4471.217 kb on + strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.254 kb on + strandat 4471.254 kb on + strandat 4471.255 kb on - strandat 4471.255 kb on - strandat 4471.377 kb on + strandat 4471.377 kb on + strandat 4471.378 kb on - strandat 4471.378 kb on - strandat 4471.378 kb on - strandat 4471.421 kb on + strandat 4471.422 kb on - strandat 4471.422 kb on - strandat 4472.180 kb on + strandat 4472.181 kb on - strandat 4472.181 kb on - strandat 4472.228 kb on + strandat 4472.228 kb on + strandat 4472.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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4,469,812 + Pf6N2E2_3836 0.12 +0.2
4,469,812 + Pf6N2E2_3836 0.12 -1.0
4,469,812 + Pf6N2E2_3836 0.12 -0.1
4,469,812 + Pf6N2E2_3836 0.12 +2.1
4,469,813 - Pf6N2E2_3836 0.12 -0.3
4,469,868 - Pf6N2E2_3836 0.19 +0.3
4,470,073 + Pf6N2E2_3836 0.45 +0.1
4,470,074 - Pf6N2E2_3836 0.45 +0.8
4,470,074 - Pf6N2E2_3836 0.45 -0.3
4,470,075 + Pf6N2E2_3836 0.45 +0.3
4,470,075 + Pf6N2E2_3836 0.45 +0.4
4,470,076 - Pf6N2E2_3836 0.45 -0.0
4,470,076 - Pf6N2E2_3836 0.45 +1.3
4,470,076 - Pf6N2E2_3836 0.45 -0.4
4,470,392 + Pf6N2E2_3836 0.86 -2.5
4,470,392 + Pf6N2E2_3836 0.86 -0.8
4,470,392 + Pf6N2E2_3836 0.86 +0.8
4,470,392 + Pf6N2E2_3836 0.86 +0.3
4,470,392 + Pf6N2E2_3836 0.86 -1.6
4,470,393 - Pf6N2E2_3836 0.86 -2.1
4,470,573 - -1.5
4,470,581 + +0.5
4,470,582 - +0.5
4,470,692 + Pf6N2E2_3837 0.15 -1.8
4,470,693 - Pf6N2E2_3837 0.15 +1.5
4,470,693 - Pf6N2E2_3837 0.15 +0.0
4,470,693 - Pf6N2E2_3837 0.15 +1.9
4,470,896 + Pf6N2E2_3837 0.42 +0.8
4,470,897 - Pf6N2E2_3837 0.42 -0.2
4,470,897 - Pf6N2E2_3837 0.42 -0.8
4,470,897 - Pf6N2E2_3837 0.42 +1.8
4,470,911 + Pf6N2E2_3837 0.44 -0.6
4,470,911 + Pf6N2E2_3837 0.44 +0.8
4,470,911 + Pf6N2E2_3837 0.44 +0.5
4,470,912 - Pf6N2E2_3837 0.44 +0.7
4,470,912 - Pf6N2E2_3837 0.44 +0.2
4,471,079 + Pf6N2E2_3837 0.67 +0.5
4,471,079 + Pf6N2E2_3837 0.67 +2.2
4,471,080 - Pf6N2E2_3837 0.67 -0.4
4,471,080 - Pf6N2E2_3837 0.67 +1.4
4,471,080 - Pf6N2E2_3837 0.67 -0.0
4,471,080 - Pf6N2E2_3837 0.67 +1.1
4,471,080 - Pf6N2E2_3837 0.67 +0.9
4,471,102 + Pf6N2E2_3837 0.70 -1.7
4,471,102 + Pf6N2E2_3837 0.70 +0.6
4,471,103 - Pf6N2E2_3837 0.70 -0.1
4,471,103 - Pf6N2E2_3837 0.70 +1.2
4,471,103 - Pf6N2E2_3837 0.70 -0.1
4,471,115 + Pf6N2E2_3837 0.72 +0.4
4,471,115 + Pf6N2E2_3837 0.72 +1.8
4,471,116 - Pf6N2E2_3837 0.72 +0.1
4,471,122 + Pf6N2E2_3837 0.73 +0.4
4,471,123 - Pf6N2E2_3837 0.73 -0.5
4,471,138 + Pf6N2E2_3837 0.75 +1.3
4,471,139 - Pf6N2E2_3837 0.75 +0.5
4,471,217 + Pf6N2E2_3837 0.85 +0.7
4,471,217 + Pf6N2E2_3837 0.85 -0.1
4,471,217 + Pf6N2E2_3837 0.85 +1.2
4,471,217 + Pf6N2E2_3837 0.85 +1.7
4,471,217 + Pf6N2E2_3837 0.85 +0.6
4,471,218 - Pf6N2E2_3837 0.85 +0.2
4,471,218 - Pf6N2E2_3837 0.85 +0.0
4,471,218 - Pf6N2E2_3837 0.85 +1.5
4,471,218 - Pf6N2E2_3837 0.85 -0.6
4,471,218 - Pf6N2E2_3837 0.85 +0.2
4,471,218 - Pf6N2E2_3837 0.85 +1.3
4,471,218 - Pf6N2E2_3837 0.85 +0.7
4,471,218 - Pf6N2E2_3837 0.85 +0.4
4,471,254 + +0.8
4,471,254 + +1.4
4,471,255 - -3.1
4,471,255 - +0.7
4,471,377 + +1.4
4,471,377 + +1.4
4,471,378 - -1.0
4,471,378 - +1.6
4,471,378 - -0.2
4,471,421 + +2.8
4,471,422 - +3.4
4,471,422 - +3.0
4,472,180 + +2.3
4,472,181 - +2.3
4,472,181 - +0.9
4,472,228 + +2.0
4,472,228 + +2.0
4,472,229 - +2.2

Or see this region's nucleotide sequence