Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3655 and Pf6N2E2_3656 are separated by 16 nucleotides Pf6N2E2_3656 and Pf6N2E2_3657 overlap by 4 nucleotides Pf6N2E2_3657 and Pf6N2E2_3658 are separated by 150 nucleotides
Pf6N2E2_3655 - Hypothetical protein FIG015671 in large core OS assembly cluster, at 4,255,682 to 4,257,097
_3655
Pf6N2E2_3656 - Probable transcription regulator Mig-14, at 4,257,114 to 4,258,013
_3656
Pf6N2E2_3657 - Lipid A export ATP-binding/permease protein MsbA, at 4,258,010 to 4,259,800
_3657
Pf6N2E2_3658 - Lipid A core - O-antigen ligase and related enzymes, at 4,259,951 to 4,261,084
_3658
Position (kb) 4258
4259
4260 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4257.042 kb on - strand at 4257.124 kb on + strand at 4257.124 kb on + strand at 4257.157 kb on + strand at 4257.157 kb on + strand at 4257.301 kb on + strand, within Pf6N2E2_3656 at 4257.301 kb on + strand, within Pf6N2E2_3656 at 4257.301 kb on + strand, within Pf6N2E2_3656 at 4257.301 kb on + strand, within Pf6N2E2_3656 at 4257.301 kb on + strand, within Pf6N2E2_3656 at 4257.373 kb on + strand, within Pf6N2E2_3656 at 4257.478 kb on + strand, within Pf6N2E2_3656 at 4257.478 kb on + strand, within Pf6N2E2_3656 at 4257.478 kb on + strand, within Pf6N2E2_3656 at 4257.478 kb on + strand, within Pf6N2E2_3656 at 4257.478 kb on + strand, within Pf6N2E2_3656 at 4257.478 kb on + strand, within Pf6N2E2_3656 at 4257.515 kb on + strand, within Pf6N2E2_3656 at 4257.515 kb on + strand, within Pf6N2E2_3656 at 4257.515 kb on + strand, within Pf6N2E2_3656 at 4257.584 kb on + strand, within Pf6N2E2_3656 at 4257.584 kb on + strand, within Pf6N2E2_3656 at 4257.589 kb on + strand, within Pf6N2E2_3656 at 4257.589 kb on + strand, within Pf6N2E2_3656 at 4257.673 kb on + strand, within Pf6N2E2_3656 at 4257.673 kb on + strand, within Pf6N2E2_3656 at 4257.673 kb on + strand, within Pf6N2E2_3656 at 4257.673 kb on + strand at 4257.673 kb on + strand, within Pf6N2E2_3656 at 4257.673 kb on + strand, within Pf6N2E2_3656 at 4257.856 kb on + strand, within Pf6N2E2_3656 at 4257.949 kb on + strand at 4259.846 kb on - strand at 4259.861 kb on - strand at 4259.953 kb on - strand at 4259.999 kb on - strand at 4259.999 kb on - strand at 4259.999 kb on - strand at 4260.255 kb on - strand, within Pf6N2E2_3658 at 4260.255 kb on - strand, within Pf6N2E2_3658 at 4260.277 kb on - strand, within Pf6N2E2_3658 at 4260.326 kb on - strand, within Pf6N2E2_3658 at 4260.339 kb on - strand, within Pf6N2E2_3658 at 4260.339 kb on - strand, within Pf6N2E2_3658 at 4260.372 kb on - strand, within Pf6N2E2_3658 at 4260.390 kb on - strand, within Pf6N2E2_3658 at 4260.760 kb on - strand, within Pf6N2E2_3658
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 4,257,042 - -2.6 4,257,124 + -3.4 4,257,124 + -1.4 4,257,157 + -0.6 4,257,157 + -1.1 4,257,301 + Pf6N2E2_3656 0.21 -2.7 4,257,301 + Pf6N2E2_3656 0.21 -1.9 4,257,301 + Pf6N2E2_3656 0.21 -2.5 4,257,301 + Pf6N2E2_3656 0.21 -2.0 4,257,301 + Pf6N2E2_3656 0.21 -2.4 4,257,373 + Pf6N2E2_3656 0.29 -1.6 4,257,478 + Pf6N2E2_3656 0.40 -0.1 4,257,478 + Pf6N2E2_3656 0.40 -1.9 4,257,478 + Pf6N2E2_3656 0.40 -1.3 4,257,478 + Pf6N2E2_3656 0.40 +1.1 4,257,478 + Pf6N2E2_3656 0.40 -0.3 4,257,478 + Pf6N2E2_3656 0.40 -1.9 4,257,515 + Pf6N2E2_3656 0.45 -0.8 4,257,515 + Pf6N2E2_3656 0.45 -3.0 4,257,515 + Pf6N2E2_3656 0.45 -1.8 4,257,584 + Pf6N2E2_3656 0.52 -2.9 4,257,584 + Pf6N2E2_3656 0.52 -3.1 4,257,589 + Pf6N2E2_3656 0.53 +1.4 4,257,589 + Pf6N2E2_3656 0.53 -2.6 4,257,673 + Pf6N2E2_3656 0.62 -2.4 4,257,673 + Pf6N2E2_3656 0.62 -1.9 4,257,673 + Pf6N2E2_3656 0.62 -0.7 4,257,673 + +1.1 4,257,673 + Pf6N2E2_3656 0.62 -2.1 4,257,673 + Pf6N2E2_3656 0.62 -1.1 4,257,856 + Pf6N2E2_3656 0.82 -0.3 4,257,949 + -2.6 4,259,846 - +1.7 4,259,861 - -0.9 4,259,953 - -1.2 4,259,999 - -3.0 4,259,999 - -0.7 4,259,999 - +1.4 4,260,255 - Pf6N2E2_3658 0.27 +0.7 4,260,255 - Pf6N2E2_3658 0.27 -2.1 4,260,277 - Pf6N2E2_3658 0.29 -2.7 4,260,326 - Pf6N2E2_3658 0.33 -2.4 4,260,339 - Pf6N2E2_3658 0.34 -3.3 4,260,339 - Pf6N2E2_3658 0.34 -3.0 4,260,372 - Pf6N2E2_3658 0.37 -0.6 4,260,390 - Pf6N2E2_3658 0.39 -1.7 4,260,760 - Pf6N2E2_3658 0.71 -2.7
Or see this region's nucleotide sequence