Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3652

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3650 and Pf6N2E2_3651 overlap by 4 nucleotidesPf6N2E2_3651 and Pf6N2E2_3652 are separated by 34 nucleotidesPf6N2E2_3652 and Pf6N2E2_3653 are separated by 147 nucleotides Pf6N2E2_3650 - Oxidoreductase, FAD-binding, at 4,250,313 to 4,251,488 _3650 Pf6N2E2_3651 - OXIDOREDUCTASE, ALDO/KETO REDUCTASE FAMILY, at 4,251,485 to 4,252,297 _3651 Pf6N2E2_3652 - Cation transport ATPase, at 4,252,332 to 4,253,297 _3652 Pf6N2E2_3653 - ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase, at 4,253,445 to 4,254,866 _3653 Position (kb) 4252 4253 4254Strain fitness (log2 ratio) -1 0 1 2at 4252.272 kb on + strandat 4252.340 kb on + strandat 4252.416 kb on + strandat 4252.416 kb on + strandat 4252.416 kb on + strandat 4252.417 kb on - strandat 4252.417 kb on - strandat 4252.564 kb on - strand, within Pf6N2E2_3652at 4252.564 kb on - strand, within Pf6N2E2_3652at 4252.630 kb on - strand, within Pf6N2E2_3652at 4252.908 kb on + strand, within Pf6N2E2_3652at 4252.909 kb on - strand, within Pf6N2E2_3652at 4252.909 kb on - strand, within Pf6N2E2_3652at 4253.026 kb on - strand, within Pf6N2E2_3652at 4253.026 kb on - strand, within Pf6N2E2_3652at 4253.067 kb on + strand, within Pf6N2E2_3652at 4253.067 kb on + strand, within Pf6N2E2_3652at 4253.067 kb on + strand, within Pf6N2E2_3652at 4253.067 kb on + strand, within Pf6N2E2_3652at 4253.067 kb on + strand, within Pf6N2E2_3652at 4253.067 kb on + strand, within Pf6N2E2_3652at 4253.068 kb on - strand, within Pf6N2E2_3652at 4253.068 kb on - strand, within Pf6N2E2_3652at 4253.068 kb on - strand, within Pf6N2E2_3652at 4253.089 kb on + strand, within Pf6N2E2_3652at 4253.089 kb on + strand, within Pf6N2E2_3652at 4253.089 kb on + strand, within Pf6N2E2_3652at 4253.090 kb on - strand, within Pf6N2E2_3652at 4253.090 kb on - strand, within Pf6N2E2_3652at 4253.090 kb on - strand, within Pf6N2E2_3652at 4253.116 kb on - strand, within Pf6N2E2_3652at 4253.295 kb on + strandat 4253.437 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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4,252,272 + -1.0
4,252,340 + +1.5
4,252,416 + +0.0
4,252,416 + +0.2
4,252,416 + -0.1
4,252,417 - +0.3
4,252,417 - +1.4
4,252,564 - Pf6N2E2_3652 0.24 -0.3
4,252,564 - Pf6N2E2_3652 0.24 +0.8
4,252,630 - Pf6N2E2_3652 0.31 -0.1
4,252,908 + Pf6N2E2_3652 0.60 +1.7
4,252,909 - Pf6N2E2_3652 0.60 +0.9
4,252,909 - Pf6N2E2_3652 0.60 +0.8
4,253,026 - Pf6N2E2_3652 0.72 -0.3
4,253,026 - Pf6N2E2_3652 0.72 +1.4
4,253,067 + Pf6N2E2_3652 0.76 +1.3
4,253,067 + Pf6N2E2_3652 0.76 +0.6
4,253,067 + Pf6N2E2_3652 0.76 +1.3
4,253,067 + Pf6N2E2_3652 0.76 +1.0
4,253,067 + Pf6N2E2_3652 0.76 +1.3
4,253,067 + Pf6N2E2_3652 0.76 +0.4
4,253,068 - Pf6N2E2_3652 0.76 +0.5
4,253,068 - Pf6N2E2_3652 0.76 +1.3
4,253,068 - Pf6N2E2_3652 0.76 +1.7
4,253,089 + Pf6N2E2_3652 0.78 +1.5
4,253,089 + Pf6N2E2_3652 0.78 +1.9
4,253,089 + Pf6N2E2_3652 0.78 +0.9
4,253,090 - Pf6N2E2_3652 0.78 +1.1
4,253,090 - Pf6N2E2_3652 0.78 -0.8
4,253,090 - Pf6N2E2_3652 0.78 +1.5
4,253,116 - Pf6N2E2_3652 0.81 +1.0
4,253,295 + +1.0
4,253,437 - +1.1

Or see this region's nucleotide sequence