Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3621 and Pf6N2E2_3622 are separated by 264 nucleotides Pf6N2E2_3622 and Pf6N2E2_3623 are separated by 109 nucleotides Pf6N2E2_3623 and Pf6N2E2_3624 are separated by 123 nucleotides
Pf6N2E2_3621 - putative transporter, required for glycine utilization (from data) , at 4,216,901 to 4,217,512
_3621
Pf6N2E2_3622 - 3'-to-5' oligoribonuclease (orn), at 4,217,777 to 4,218,319
_3622
Pf6N2E2_3623 - Ribosome small subunit-stimulated GTPase EngC, at 4,218,429 to 4,219,460
_3623
Pf6N2E2_3624 - Flagellar motor rotation protein MotB, at 4,219,584 to 4,220,621
_3624
Position (kb)
4218
4219
4220 Strain fitness (log2 ratio)
-2
-1
0
1 at 4217.496 kb on + strand at 4217.496 kb on + strand at 4217.496 kb on + strand at 4217.497 kb on - strand at 4217.598 kb on + strand at 4217.598 kb on + strand at 4217.598 kb on + strand at 4217.599 kb on - strand at 4217.599 kb on - strand at 4218.338 kb on - strand at 4218.338 kb on - strand at 4218.350 kb on + strand at 4218.351 kb on - strand at 4218.351 kb on - strand at 4218.355 kb on + strand at 4218.356 kb on - strand at 4218.356 kb on - strand at 4218.394 kb on - strand at 4218.398 kb on + strand at 4218.398 kb on + strand at 4218.417 kb on + strand at 4219.455 kb on + strand at 4219.456 kb on - strand at 4219.579 kb on - strand at 4219.829 kb on + strand, within Pf6N2E2_3624 at 4219.830 kb on - strand, within Pf6N2E2_3624 at 4220.002 kb on + strand, within Pf6N2E2_3624 at 4220.018 kb on + strand, within Pf6N2E2_3624 at 4220.092 kb on + strand, within Pf6N2E2_3624 at 4220.093 kb on - strand, within Pf6N2E2_3624 at 4220.404 kb on + strand, within Pf6N2E2_3624 at 4220.404 kb on + strand, within Pf6N2E2_3624 at 4220.405 kb on - strand, within Pf6N2E2_3624 at 4220.405 kb on - strand, within Pf6N2E2_3624 at 4220.405 kb on - strand, within Pf6N2E2_3624 at 4220.405 kb on - strand, within Pf6N2E2_3624 at 4220.446 kb on + strand, within Pf6N2E2_3624 at 4220.447 kb on - strand, within Pf6N2E2_3624 at 4220.447 kb on - strand, within Pf6N2E2_3624
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 4,217,496 + -1.2 4,217,496 + -1.7 4,217,496 + -0.8 4,217,497 - -1.5 4,217,598 + +1.2 4,217,598 + -0.0 4,217,598 + +0.4 4,217,599 - -1.6 4,217,599 - -0.2 4,218,338 - +0.8 4,218,338 - +0.1 4,218,350 + -0.2 4,218,351 - +1.1 4,218,351 - +0.7 4,218,355 + -2.1 4,218,356 - -0.1 4,218,356 - -0.2 4,218,394 - -0.9 4,218,398 + +0.2 4,218,398 + -0.7 4,218,417 + -0.6 4,219,455 + -0.2 4,219,456 - -0.2 4,219,579 - -0.2 4,219,829 + Pf6N2E2_3624 0.24 -1.4 4,219,830 - Pf6N2E2_3624 0.24 +0.1 4,220,002 + Pf6N2E2_3624 0.40 -0.1 4,220,018 + Pf6N2E2_3624 0.42 -1.2 4,220,092 + Pf6N2E2_3624 0.49 +0.2 4,220,093 - Pf6N2E2_3624 0.49 +0.9 4,220,404 + Pf6N2E2_3624 0.79 -0.2 4,220,404 + Pf6N2E2_3624 0.79 +1.0 4,220,405 - Pf6N2E2_3624 0.79 -0.1 4,220,405 - Pf6N2E2_3624 0.79 +1.5 4,220,405 - Pf6N2E2_3624 0.79 +0.1 4,220,405 - Pf6N2E2_3624 0.79 -0.3 4,220,446 + Pf6N2E2_3624 0.83 -2.3 4,220,447 - Pf6N2E2_3624 0.83 -0.2 4,220,447 - Pf6N2E2_3624 0.83 -1.6
Or see this region's nucleotide sequence