Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3615 and Pf6N2E2_3616 overlap by 1 nucleotides Pf6N2E2_3616 and Pf6N2E2_3617 overlap by 4 nucleotides
Pf6N2E2_3615 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 4,209,510 to 4,210,481
_3615
Pf6N2E2_3616 - DNA mismatch repair protein MutL, at 4,210,481 to 4,212,394
_3616
Pf6N2E2_3617 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 4,212,391 to 4,213,818
_3617
Position (kb)
4210
4211
4212
4213 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4209.491 kb on - strand at 4209.520 kb on - strand at 4209.539 kb on - strand at 4210.705 kb on - strand, within Pf6N2E2_3616 at 4210.705 kb on - strand, within Pf6N2E2_3616 at 4210.705 kb on - strand, within Pf6N2E2_3616 at 4210.954 kb on - strand, within Pf6N2E2_3616 at 4210.954 kb on - strand, within Pf6N2E2_3616 at 4210.954 kb on - strand, within Pf6N2E2_3616 at 4210.954 kb on - strand, within Pf6N2E2_3616 at 4211.021 kb on - strand, within Pf6N2E2_3616 at 4211.021 kb on - strand, within Pf6N2E2_3616 at 4211.022 kb on + strand, within Pf6N2E2_3616 at 4211.023 kb on - strand, within Pf6N2E2_3616 at 4211.023 kb on - strand, within Pf6N2E2_3616 at 4211.023 kb on - strand, within Pf6N2E2_3616 at 4211.023 kb on - strand, within Pf6N2E2_3616 at 4211.023 kb on - strand, within Pf6N2E2_3616 at 4211.023 kb on - strand, within Pf6N2E2_3616 at 4211.023 kb on - strand, within Pf6N2E2_3616 at 4211.023 kb on - strand, within Pf6N2E2_3616 at 4211.023 kb on - strand, within Pf6N2E2_3616 at 4211.023 kb on - strand, within Pf6N2E2_3616 at 4211.182 kb on - strand, within Pf6N2E2_3616 at 4211.182 kb on - strand, within Pf6N2E2_3616 at 4211.182 kb on - strand, within Pf6N2E2_3616 at 4211.182 kb on - strand, within Pf6N2E2_3616 at 4211.182 kb on - strand, within Pf6N2E2_3616 at 4211.188 kb on - strand, within Pf6N2E2_3616 at 4211.188 kb on - strand, within Pf6N2E2_3616 at 4211.227 kb on - strand, within Pf6N2E2_3616 at 4211.404 kb on - strand, within Pf6N2E2_3616 at 4211.442 kb on - strand, within Pf6N2E2_3616 at 4211.442 kb on - strand, within Pf6N2E2_3616 at 4211.442 kb on - strand, within Pf6N2E2_3616 at 4211.463 kb on - strand, within Pf6N2E2_3616 at 4211.463 kb on - strand, within Pf6N2E2_3616 at 4211.463 kb on - strand, within Pf6N2E2_3616 at 4211.463 kb on - strand, within Pf6N2E2_3616 at 4211.463 kb on - strand, within Pf6N2E2_3616 at 4211.601 kb on + strand, within Pf6N2E2_3616 at 4211.602 kb on - strand, within Pf6N2E2_3616 at 4211.602 kb on - strand, within Pf6N2E2_3616 at 4211.608 kb on - strand, within Pf6N2E2_3616 at 4212.038 kb on - strand, within Pf6N2E2_3616 at 4212.596 kb on + strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 4,209,491 - +1.7 4,209,520 - +3.5 4,209,539 - +0.8 4,210,705 - Pf6N2E2_3616 0.12 +1.6 4,210,705 - Pf6N2E2_3616 0.12 -0.2 4,210,705 - Pf6N2E2_3616 0.12 +0.4 4,210,954 - Pf6N2E2_3616 0.25 -2.4 4,210,954 - Pf6N2E2_3616 0.25 -0.6 4,210,954 - Pf6N2E2_3616 0.25 -1.0 4,210,954 - Pf6N2E2_3616 0.25 -2.0 4,211,021 - Pf6N2E2_3616 0.28 +0.2 4,211,021 - Pf6N2E2_3616 0.28 +0.2 4,211,022 + Pf6N2E2_3616 0.28 -1.2 4,211,023 - Pf6N2E2_3616 0.28 -2.2 4,211,023 - Pf6N2E2_3616 0.28 +1.4 4,211,023 - Pf6N2E2_3616 0.28 -1.5 4,211,023 - Pf6N2E2_3616 0.28 -1.2 4,211,023 - Pf6N2E2_3616 0.28 -1.0 4,211,023 - Pf6N2E2_3616 0.28 -1.6 4,211,023 - Pf6N2E2_3616 0.28 -2.5 4,211,023 - Pf6N2E2_3616 0.28 -0.0 4,211,023 - Pf6N2E2_3616 0.28 -2.0 4,211,023 - Pf6N2E2_3616 0.28 -0.7 4,211,182 - Pf6N2E2_3616 0.37 -0.8 4,211,182 - Pf6N2E2_3616 0.37 -3.5 4,211,182 - Pf6N2E2_3616 0.37 -0.3 4,211,182 - Pf6N2E2_3616 0.37 -2.2 4,211,182 - Pf6N2E2_3616 0.37 -1.9 4,211,188 - Pf6N2E2_3616 0.37 -1.3 4,211,188 - Pf6N2E2_3616 0.37 -2.2 4,211,227 - Pf6N2E2_3616 0.39 -2.4 4,211,404 - Pf6N2E2_3616 0.48 -3.5 4,211,442 - Pf6N2E2_3616 0.50 -2.6 4,211,442 - Pf6N2E2_3616 0.50 -1.1 4,211,442 - Pf6N2E2_3616 0.50 -2.3 4,211,463 - Pf6N2E2_3616 0.51 -0.0 4,211,463 - Pf6N2E2_3616 0.51 +1.8 4,211,463 - Pf6N2E2_3616 0.51 -1.6 4,211,463 - Pf6N2E2_3616 0.51 +0.1 4,211,463 - Pf6N2E2_3616 0.51 -2.0 4,211,601 + Pf6N2E2_3616 0.59 -1.1 4,211,602 - Pf6N2E2_3616 0.59 -1.1 4,211,602 - Pf6N2E2_3616 0.59 +0.1 4,211,608 - Pf6N2E2_3616 0.59 -2.4 4,212,038 - Pf6N2E2_3616 0.81 -1.0 4,212,596 + Pf6N2E2_3617 0.14 -0.3 4,212,597 - Pf6N2E2_3617 0.14 -0.6 4,212,597 - Pf6N2E2_3617 0.14 -1.0 4,212,597 - Pf6N2E2_3617 0.14 -2.0 4,212,597 - Pf6N2E2_3617 0.14 +0.5 4,212,597 - Pf6N2E2_3617 0.14 -2.1 4,212,597 - Pf6N2E2_3617 0.14 -0.2 4,212,597 - Pf6N2E2_3617 0.14 -0.9 4,212,597 - Pf6N2E2_3617 0.14 -0.4 4,212,597 - Pf6N2E2_3617 0.14 -1.3 4,212,597 - Pf6N2E2_3617 0.14 -2.2 4,212,597 - Pf6N2E2_3617 0.14 -2.5
Or see this region's nucleotide sequence